View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15629_high_12 (Length: 369)
Name: NF15629_high_12
Description: NF15629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15629_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 26 - 340
Target Start/End: Original strand, 38526905 - 38527219
Alignment:
| Q |
26 |
catgtgcagcttttgcataagcagtttgacctttagaagccattctgcctatgataacagccatggcagcacctgacacaacaagaagtggaagtgttga |
125 |
Q |
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| T |
38526905 |
catgtgcagcttttgcataagcagtttgacctttagaagccattctgcctatgataacagccatggcagcacctgacacaacaagaaatggaagtgttga |
38527004 |
T |
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| Q |
126 |
catcataacaacagtaagaagccacccttttgtaaatgctatcacaaaacccccaataaatgttgctattagctgcagaaacttcccaacctgttttttc |
225 |
Q |
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| T |
38527005 |
catcataacaacagtaagaagccacccttttgtaaatgctatcacaaaacccccaataaatgttgctattagctgcagaaacttcccaacctgttttttc |
38527104 |
T |
|
| Q |
226 |
aaacacaagattaaaccatcaaattaagtaaattaaattaaaaccaactttttactccaaaatcttactaattttcataccttctcacccatggcatctt |
325 |
Q |
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|||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38527105 |
aaacacaaaattaaaccttcaaattaagtaaattaaattcaaaccaactttttactccaaaatcttactaattttcataccttctcacccatggcatctt |
38527204 |
T |
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| Q |
326 |
gaataagaacagtat |
340 |
Q |
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||||||||||||||| |
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| T |
38527205 |
gaataagaacagtat |
38527219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 26 - 230
Target Start/End: Original strand, 38568046 - 38568250
Alignment:
| Q |
26 |
catgtgcagcttttgcataagcagtttgacctttagaagccattctgcctatgataacagccatggcagcacctgacacaacaagaagtggaagtgttga |
125 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38568046 |
catgcgcagcttttgcataagcagtttgacctttagaagccatcctgcctatgattacagccatggcagcacccgacacaacaagaagtggaagtgttga |
38568145 |
T |
|
| Q |
126 |
catcataacaacagtaagaagccacccttttgtaaatgctatcacaaaacccccaataaatgttgctattagctgcagaaacttcccaacctgttttttc |
225 |
Q |
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||||| ||||||||||||||||| ||| | |||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38568146 |
catcaatacaacagtaagaagccatcctctggtaaatgctatcacaaaaccgccaacaaatgttgctattagctgcagaaatttcccaacctgttttttc |
38568245 |
T |
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| Q |
226 |
aaaca |
230 |
Q |
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||||| |
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| T |
38568246 |
aaaca |
38568250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 38568479 - 38568520
Alignment:
| Q |
299 |
ttcataccttctcacccatggcatcttgaataagaacagtat |
340 |
Q |
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| T |
38568479 |
ttcataccttctcacccatggcatcttgaataagaacagtat |
38568520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 302 - 340
Target Start/End: Complemental strand, 51198113 - 51198075
Alignment:
| Q |
302 |
ataccttctcacccatggcatcttgaataagaacagtat |
340 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
51198113 |
ataccttctcacccatggcatcttgaataagaacagtat |
51198075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 340
Target Start/End: Complemental strand, 51144458 - 51144420
Alignment:
| Q |
302 |
ataccttctcacccatggcatcttgaataagaacagtat |
340 |
Q |
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|||||||||||||||||||||| | |||||||||||||| |
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| T |
51144458 |
ataccttctcacccatggcatccttaataagaacagtat |
51144420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 29938485 - 29938521
Alignment:
| Q |
302 |
ataccttctcacccatggcatcttgaataagaacagt |
338 |
Q |
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|||||||||| ||||||||||||| |||||||||||| |
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| T |
29938485 |
ataccttctcccccatggcatctttaataagaacagt |
29938521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 335
Target Start/End: Original strand, 49738535 - 49738568
Alignment:
| Q |
302 |
ataccttctcacccatggcatcttgaataagaac |
335 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
49738535 |
ataccttctctcccatggcatcttgaataagaac |
49738568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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