View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15629_high_18 (Length: 349)
Name: NF15629_high_18
Description: NF15629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15629_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 163 - 347
Target Start/End: Complemental strand, 8196610 - 8196426
Alignment:
| Q |
163 |
cctcacaagaataacatgaattcaaatttgtctgctaaagtaaagaattatcatgctggcattgacaaactgacatattaattaccatccaatgtagcat |
262 |
Q |
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| T |
8196610 |
cctcacaagaataacatgaattcaaatttgtcagctaaagtaaagaattatcatgctggcattgacaaactgatatattaattaccatccaatgtagcat |
8196511 |
T |
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| Q |
263 |
gcgtacaggacaaacaaataacagagtcaaacttggaaagacatggacagggcagtctcaatatagatg-atgtccatctcattgc |
347 |
Q |
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| T |
8196510 |
gcgtacaggacaaacaaataacagagtcaaacttggaaagacatggacagggcagtctcaatatagatgtatg-ccatctcattgc |
8196426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 163 - 347
Target Start/End: Complemental strand, 8201370 - 8201186
Alignment:
| Q |
163 |
cctcacaagaataacatgaattcaaatttgtctgctaaagtaaagaattatcatgctggcattgacaaactgacatattaattaccatccaatgtagcat |
262 |
Q |
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| T |
8201370 |
cctcacaagaataacatgaattcaaatttgtcagctaaagtaaagaattatcatgctggcattgacaaactgatatattaattaccatccaatgtagcat |
8201271 |
T |
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| Q |
263 |
gcgtacaggacaaacaaataacagagtcaaacttggaaagacatggacagggcagtctcaatatagatg-atgtccatctcattgc |
347 |
Q |
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| T |
8201270 |
gcgtacaggacaaacaaataacagagtcaaacttggaaagacatggacagggcagtctcaatatagatgtatg-ccatctcattgc |
8201186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 8196843 - 8196682
Alignment:
| Q |
1 |
acccagcataaaggttattcaacagaataaggttggccgcagatggtcatgaaccagaagcaacagaaacaaatagttaatagattgatgaaaaacatat |
100 |
Q |
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| T |
8196843 |
acccagcataaaggttattcaacagaataaggttggcagcagatggtcatgaatcagaagcaacagaaacaaatagttaatagattgatgaaaaacatat |
8196744 |
T |
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| Q |
101 |
gaattaaagcatggagcaaaagttgaaattagaaaatttccaactttgcataaaggaagctg |
162 |
Q |
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| T |
8196743 |
gaattaaagcatggagcaaaagttgaaattagaaaatttccaactttgcataaaggaagctg |
8196682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 8201603 - 8201442
Alignment:
| Q |
1 |
acccagcataaaggttattcaacagaataaggttggccgcagatggtcatgaaccagaagcaacagaaacaaatagttaatagattgatgaaaaacatat |
100 |
Q |
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| T |
8201603 |
acccagcataaaggttattcaacagaataaggttggcagcagatggtcatgaatcagaagcaacagaaacaaatagttaatagattgatgaaaaacatat |
8201504 |
T |
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| Q |
101 |
gaattaaagcatggagcaaaagttgaaattagaaaatttccaactttgcataaaggaagctg |
162 |
Q |
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| T |
8201503 |
gaattaaagcatggagcaaaagttgaaattagaaaatttccaactttgcataaaggaagctg |
8201442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 4918040 - 4918121
Alignment:
| Q |
77 |
ttaatagattgatgaaaaacatatgaattaaagcatggagcaaaagttgaaattagaaaatttccaactttgcataaaggaa |
158 |
Q |
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| T |
4918040 |
ttaataggtcgatgaaaaacatatgaattaaagcatggagcaaaagttgatattagaaagtttgcaactttgcattaaggaa |
4918121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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