View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15629_high_19 (Length: 346)

Name: NF15629_high_19
Description: NF15629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15629_high_19
NF15629_high_19
[»] chr5 (21 HSPs)
chr5 (20-325)||(22767368-22767673)
chr5 (29-302)||(15988883-15989156)
chr5 (29-302)||(20204735-20205008)
chr5 (43-253)||(41940920-41941130)
chr5 (29-302)||(8387866-8388139)
chr5 (29-250)||(30222985-30223206)
chr5 (144-302)||(12660211-12660369)
chr5 (29-256)||(27533086-27533314)
chr5 (29-301)||(4267891-4268151)
chr5 (109-302)||(26597591-26597784)
chr5 (119-301)||(27292304-27292486)
chr5 (129-302)||(25730688-25730861)
chr5 (153-302)||(11375647-11375796)
chr5 (110-192)||(16074597-16074679)
chr5 (20-164)||(34653864-34654007)
chr5 (152-302)||(37448028-37448178)
chr5 (29-112)||(12660124-12660207)
chr5 (96-134)||(37447990-37448028)
chr5 (182-247)||(34652442-34652507)
chr5 (31-64)||(25730623-25730656)
chr5 (29-65)||(27292226-27292262)
[»] chr7 (13 HSPs)
chr7 (19-325)||(9328713-9329018)
chr7 (33-302)||(16731717-16731986)
chr7 (33-302)||(17709851-17710120)
chr7 (29-302)||(22289021-22289294)
chr7 (29-254)||(1581395-1581620)
chr7 (86-303)||(17877245-17877462)
chr7 (144-301)||(16098385-16098542)
chr7 (29-291)||(29201100-29201356)
chr7 (93-254)||(30493791-30493952)
chr7 (29-108)||(16098263-16098342)
chr7 (176-277)||(34578437-34578538)
chr7 (147-242)||(30824668-30824763)
chr7 (28-124)||(11745953-11746049)
[»] chr4 (16 HSPs)
chr4 (19-325)||(32577159-32577463)
chr4 (19-325)||(49119511-49119804)
chr4 (19-325)||(28425965-28426259)
chr4 (33-302)||(49951097-49951366)
chr4 (30-318)||(37245970-37246262)
chr4 (29-302)||(21321307-21321580)
chr4 (29-302)||(29655800-29656072)
chr4 (31-302)||(18442279-18442549)
chr4 (19-302)||(2064623-2064906)
chr4 (29-302)||(28537921-28538192)
chr4 (29-302)||(55734789-55735062)
chr4 (38-325)||(51735082-51735370)
chr4 (29-302)||(51259663-51259937)
chr4 (29-302)||(56065409-56065682)
chr4 (93-287)||(43840456-43840650)
chr4 (121-302)||(41835445-41835626)
[»] chr2 (8 HSPs)
chr2 (29-302)||(88339-88612)
chr2 (31-301)||(12130773-12131043)
chr2 (29-326)||(34696014-34696309)
chr2 (29-326)||(34718426-34718721)
chr2 (31-302)||(18345621-18345879)
chr2 (96-287)||(44017467-44017658)
chr2 (29-298)||(26198471-26198742)
chr2 (230-302)||(9709910-9709982)
[»] chr8 (7 HSPs)
chr8 (30-325)||(7127004-7127299)
chr8 (29-302)||(478190-478463)
chr8 (33-325)||(8451234-8451526)
chr8 (29-302)||(40588864-40589122)
chr8 (31-301)||(23853726-23853984)
chr8 (139-302)||(13414913-13415076)
chr8 (183-325)||(185702-185842)
[»] chr1 (12 HSPs)
chr1 (29-325)||(36733473-36733772)
chr1 (29-302)||(25682431-25682704)
chr1 (29-302)||(51113095-51113368)
chr1 (29-302)||(4394939-4395211)
chr1 (45-302)||(48949858-48950115)
chr1 (19-283)||(24538279-24538544)
chr1 (29-247)||(5609119-5609337)
chr1 (29-301)||(44527045-44527305)
chr1 (119-302)||(52109324-52109507)
chr1 (161-302)||(48166149-48166290)
chr1 (127-302)||(16816934-16817108)
chr1 (99-147)||(17507308-17507356)
[»] chr6 (9 HSPs)
chr6 (29-302)||(14679939-14680215)
chr6 (29-301)||(28106919-28107191)
chr6 (110-324)||(15606106-15606320)
chr6 (96-200)||(11731885-11731989)
chr6 (29-197)||(30802209-30802377)
chr6 (165-302)||(15053309-15053446)
chr6 (29-165)||(19364217-19364352)
chr6 (29-107)||(29368365-29368443)
chr6 (228-301)||(30802126-30802199)
[»] chr3 (10 HSPs)
chr3 (30-302)||(42340411-42340682)
chr3 (29-301)||(53496824-53497084)
chr3 (96-301)||(46007148-46007354)
chr3 (96-302)||(55199358-55199564)
chr3 (86-196)||(1070850-1070960)
chr3 (97-302)||(2615341-2615546)
chr3 (144-251)||(48227308-48227415)
chr3 (29-134)||(36310798-36310903)
chr3 (162-302)||(647345-647485)
chr3 (169-301)||(27941129-27941261)
[»] scaffold0446 (1 HSPs)
scaffold0446 (86-302)||(23-239)


Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 22767673 - 22767368
Alignment:
Q  20 gacatcatcagatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactca 119  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  22767673 gacaacattagatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgccacacggccaaaatagagtgcaaggtaacaactca 22767574  T
Q  120 gtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagatt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||    
T  22767573 gtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgacagtaatcatcttacatcttttgcgtgttgtgttagagatt 22767474  T
Q  220 cccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttga 319  Q
    ||| ||| ||||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||||||| ||||||||||||| || ||||||||||||     
T  22767473 cccgggggcaatttattcgggctcaaacgaaatggcaacgggcaaatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgc 22767374  T
Q  320 tgatgt 325  Q
    ||||||    
T  22767373 tgatgt 22767368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 29 - 302
Target Start/End: Complemental strand, 15989156 - 15988883
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    |||||||||||| ||||||||||||||||||||||| || ||||||  |||||||  |||||  ||||||||||||||||||||||||||||||||||||    
T  15989156 agatgcatggcaacaatggcaagaggttcataaacaaccttcactagcggttgtgcaacacgagcataatagagtgcaaggtaacaactcagtttgggag 15989057  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    |||||||||||||| | ||||||||| ||| |||||| ||||||||||||||| |||||| ||||| ||||||| |||| ||| ||||| |  |  |  |    
T  15989056 aaaccgagcgagacgttgttgaagtgaaatatggatgtcgcgttccatgaccgcaaccatattacaacttttgcgtgttatgtcagagactttcgcgagc 15988957  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    |||||||||||||||||||||||||| | ||  |||||| ||| ||||| |||||||||| |||| ||||||||    
T  15988956 aatttattcgggctcaaacgaaatggcagcggacaaatatgacagttttggagggggaggcagtaaccttactc 15988883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 29 - 302
Target Start/End: Original strand, 20204735 - 20205008
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    |||||||||||| ||||||||||||||||||||||| || ||||   ||||||||  ||||   || ||||||||| ||||||| |||||||||||||||    
T  20204735 agatgcatggcaacaatggcaagaggttcataaacaaccctcacccttggttgtgcaacacaagcaaaatagagtgtaaggtaataactcagtttgggag 20204834  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    ||||| |  ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||| |||||| ||||  ||      
T  20204835 aaaccaaatgagacatggttgaagtgcaatgtggatgccgcgttccatgaccataaccatattacatcttttacattttgtgctagagactcccgcggga 20204934  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    ||||||| | |||||||||||||||| |||| ||||||| ||| || || |||||||||| |||||||||||||    
T  20204935 aatttatccaggctcaaacgaaatggcaacgggcaaatatgacagtattggagggggaggcagtagccttactc 20205008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 43 - 253
Target Start/End: Complemental strand, 41941130 - 41940920
Alignment:
Q  43 aatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagac 142  Q
    |||||||||||||||||||||| || || | || |||||||  |||||| || |||||||||||||||| |||| || |||||||||||||||||||||     
T  41941130 aatggcaagaggttcataaacaaccctcgccaccggttgtgcaacacgggcagaatagagtgcaaggtatcaacccaatttgggagaaaccgagcgagat 41941031  T
Q  143 atggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggct 242  Q
     |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||| ||| ||||  ||  |||||||||| |||    
T  41941030 gtggttgaagtgcaatgtggatgccgcgttccatgaccgtaactatcttacatcttttgtgtgtagtgttaaagactcccgtgggaaatttattcgagct 41940931  T
Q  243 caaacgaaatg 253  Q
    |||||||||||    
T  41940930 caaacgaaatg 41940920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 29 - 302
Target Start/End: Original strand, 8387866 - 8388139
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    |||||||||||||||||| || |||||||||||||| || |||  |  | |||||  |||||| || ||||||||||||| |||||||||||| ||||||    
T  8387866 agatgcatggcagcaatgacaggaggttcataaacaaccctcatcatcgattgtgcaacacgggcagaatagagtgcaagctaacaactcagtctgggag 8387965  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    |||||| | ||||| |||||||||| |||||||||||||||||| ||||||||| |  || |||||||||| || |||||||||||||| || |  || |    
T  8387966 aaaccgcgtgagacgtggttgaagtacaatgtggatgccgcgtttcatgaccgttaaaatattacatctttcgcgtgttgtgttagagactctcgtgggc 8388065  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    |||| |||| |||||||||||||||| ||||  |||||| ||| ||||| |||||||||| ||| |||||||||    
T  8388066 aattcattcaggctcaaacgaaatggcaacgaacaaatatgacagttttggagggggaggcagttgccttactc 8388139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 30223206 - 30222985
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    ||||||||| || ||||| ||||||||||||||||| || |||| |   ||||||  |||||| || ||||||||||||||||||||||| |||||||||    
T  30223206 agatgcatgacaacaatgacaagaggttcataaacagccctcaccaacagttgtgcaacacgggcagaatagagtgcaaggtaacaactctgtttgggag 30223107  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    |||||| ||||||| ||||  ||||||||  |||| | ||||||||||||| |||||||| ||||||||||||| |||||||||||||| | ||| || |    
T  30223106 aaaccgtgcgagacgtggtcaaagtgcaacatggacgtcgcgttccatgactgtaaccatattacatcttttgcgtgttgtgttagagacttccatgggc 30223007  T
Q  229 aatttattcgggctcaaacgaa 250  Q
    ||||||||||||||||||||||    
T  30223006 aatttattcgggctcaaacgaa 30222985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 144 - 302
Target Start/End: Original strand, 12660211 - 12660369
Alignment:
Q  144 tggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctc 243  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |  || |||||||||||||||||||    
T  12660211 tggttgaagtgcaatgtggatgccgcgttccatgaacgtaaccatcttacatcttttgcgtgttgtgttagagactttcatggacaatttattcgggctc 12660310  T
Q  244 aaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    ||||||||||| | || ||||||| ||| || |||||| |||||| ||||| |||||||    
T  12660311 aaacgaaatggcagcgggcaaatatgacagtgttagagcgggaggcagtagtcttactc 12660369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 29 - 256
Target Start/End: Complemental strand, 27533314 - 27533086
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    |||||||||||| ||||| |||||||||||||||||||| |||| || |||||||  |||| | || |||| |||||||||||| |  | ||||||||||    
T  27533314 agatgcatggcaacaatgacaagaggttcataaacatccctcaccaccggttgtgcaacacagacagaatatagtgcaaggtaatagtttagtttgggag 27533215  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatc-ttttgcatgttgtgttagagattcccaggga 227  Q
    ||| || |||||||  |  ||||||| |||||||||| |||||||||||| ||||||||  ||||||| |||||| |||||||||||||| ||||  ||     
T  27533214 aaatcgcgcgagacgcgactgaagtgtaatgtggatgtcgcgttccatgatcgtaaccagtttacatctttttgcgtgttgtgttagagactcccgtggg 27533115  T
Q  228 caatttattcgggctcaaacgaaatggta 256  Q
    |||||||||||||||||||||||||||||    
T  27533114 caatttattcgggctcaaacgaaatggta 27533086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 29 - 301
Target Start/End: Original strand, 4267891 - 4268151
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    |||||||||||||||||||||||||||||||||| |||  |||| |  |||||||  |||||| || |||||||||||||            ||||||||    
T  4267891 agatgcatggcagcaatggcaagaggttcataaaaatcgttcaccatcggttgtgcaacacgggcagaatagagtgcaag------------tttgggag 4267978  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    ||||||| |||| ||||||| |||||||| ||||| |||||||| | |||  |||||||| ||||||||||||| |||||||||||||| || |  || |    
T  4267979 aaaccgaacgagtcatggttaaagtgcaacgtggacgccgcgtttcttgattgtaaccatattacatcttttgcgtgttgtgttagagactctcgtgggc 4268078  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttact 301  Q
    ||||||||| ||||||||| |||||| | || ||||||| ||| ||||| |||||||||| ||||||||||||    
T  4268079 aatttattcaggctcaaacaaaatggcagcgggcaaatatgacagttttggagggggaggcagtagccttact 4268151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 109 - 302
Target Start/End: Complemental strand, 26597784 - 26597591
Alignment:
Q  109 gtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttg 208  Q
    |||||||| |||||||||||||| || |  |||| ||||||||||||||||||||||||||||| ||||| | | | ||| |||||||||| || |||||    
T  26597784 gtaacaacacagtttgggagaaatcgtgtaagacgtggttgaagtgcaatgtggatgccgcgtttcatgatcatcaacatattacatctttcgcgtgttg 26597685  T
Q  209 tgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    ||||||||| ||||  |||||||| ||||||||||||||||||||| |||| ||||||| |||  |||| |||||||||| ||| |||||||||    
T  26597684 tgttagagactcccgtggacaattcattcgggctcaaacgaaatggcaacgagcaaatatgacaattttggagggggaggcagttgccttactc 26597591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 119 - 301
Target Start/End: Original strand, 27292304 - 27292486
Alignment:
Q  119 agtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagat 218  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||| | ||||||||||  |||||||| |||||| |||||||||||||||||||||     
T  27292304 agtttgggagaaaccgaacgagtcatggttgaagtgcaatgtggatgtcacgttccatgatagtaaccatattacatattttgcatgttgtgttagagac 27292403  T
Q  219 tcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttact 301  Q
    || |  || |||||||||||||||||||| |||||| | ||  ||||||  | ||||||  ||||||||| | ||||||||||    
T  27292404 tctcgtgggcaatttattcgggctcaaacaaaatggcagcggacaaatattattgttttgaagggggaggcaatagccttact 27292486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 129 - 302
Target Start/End: Original strand, 25730688 - 25730861
Alignment:
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||  |||  | |||||||||||||  || |  ||      
T  25730688 aaaccgagcgagacgtggttgaagtgcaatgtggattccgcgttccatgaccgtaaccatattacaattttcacgtgttgtgttagagtctcacgcggga 25730787  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    |||||||||| ||||||||||||||| | || ||||||| ||| ||||| |||||||||| |||||||||||||    
T  25730788 aatttattcgagctcaaacgaaatggcagcgggcaaatatgacagttttggagggggaggcagtagccttactc 25730861  T

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Target: chr5; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 153 - 302
Target Start/End: Complemental strand, 11375796 - 11375647
Alignment:
Q  153 tgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaat 252  Q
    |||||||||||||| ||||||||||| ||||||||| ||||| |||||||||||||||||||||| || |   |   |||||||||| ||||||||||||    
T  11375796 tgcaatgtggatgctgcgttccatgaacgtaaccatattacaacttttgcatgttgtgttagagactctcgcaggtgatttattcggactcaaacgaaat 11375697  T
Q  253 ggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    || | || | ||||| ||| ||||| |||||||||  |||||||||||||    
T  11375696 ggcagcgagtaaatatgacagttttggagggggagacagtagccttactc 11375647  T

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Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 16074597 - 16074679
Alignment:
Q  110 taacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatctta 192  Q
    |||||||| ||||| |||||||||| ||||||| ||||  ||||||||||||||||||||||||||||| |||||||||||||    
T  16074597 taacaacttagtttaggagaaaccgtgcgagacgtggtcaaagtgcaatgtggatgccgcgttccatgaacgtaaccatctta 16074679  T

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Target: chr5; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 34654007 - 34653864
Alignment:
Q  20 gacatcatcagatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactca 119  Q
    |||||||  |||||||||||| ||||||||| || |||||||||| || |||  ||  ||||||  |||||  || ||||||||||| || ||||||| |    
T  34654007 gacatcactagatgcatggcaacaatggcaaaagattcataaacaaccctcaacaccagttgtgcaacacgtgcagaatagagtgca-ggcaacaactaa 34653909  T
Q  120 gtttgggagaaaccgagcgagacatggttgaagtgcaatgtggat 164  Q
    |||||||||||||||  |||||| |||||||||||||||||||||    
T  34653908 gtttgggagaaaccgcacgagacgtggttgaagtgcaatgtggat 34653864  T

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Target: chr5; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 152 - 302
Target Start/End: Original strand, 37448028 - 37448178
Alignment:
Q  152 gtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaa 251  Q
    |||| ||||||||| || ||||||||||| ||||||||||||||| |||  ||||||||||||||| || |  ||||||| ||||||| ||||||| |||    
T  37448028 gtgcgatgtggatgtcgtgttccatgaccataaccatcttacatcgtttatatgttgtgttagagactctcgtggacaatgtattcggactcaaacaaaa 37448127  T
Q  252 tggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    ||| | |||||||| | ||| || ||  | |||||||  ||||||||||||    
T  37448128 tggcagcgtgcaaacatgacagtgttgaaaggggaggcggtagccttactc 37448178  T

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Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 12660124 - 12660207
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaa 112  Q
    |||| |||||||| ||||||||||| ||||||||||  ||| || || |||||||  ||| || ||||||||||||||||||||    
T  12660124 agatacatggcagtaatggcaagagattcataaacaggcattaccaccggttgtgcaacatggacataatagagtgcaaggtaa 12660207  T

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Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 37447990 - 37448028
Alignment:
Q  96 aatagagtgcaaggtaacaactcagtttgggagaaaccg 134  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  37447990 aatagagtgcaaggtaacagctcagtttgggagaaaccg 37448028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 34652507 - 34652442
Alignment:
Q  182 taaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaac 247  Q
    ||||||||||||||||||||  |||||||||||||| ||||  || |||||||| ||| |||||||    
T  34652507 taaccatcttacatcttttgtgtgttgtgttagagactcccgtgggcaatttatccggtctcaaac 34652442  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 25730623 - 25730656
Alignment:
Q  31 atgcatggcagcaatggcaagaggttcataaaca 64  Q
    |||||||||||||||| |||||||||||||||||    
T  25730623 atgcatggcagcaatgccaagaggttcataaaca 25730656  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 27292226 - 27292262
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacat 65  Q
    ||||||||| || ||||||||||||||||||||||||    
T  27292226 agatgcatgtcaacaatggcaagaggttcataaacat 27292262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 9329018 - 9328713
Alignment:
Q  19 ggacatcatcagatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactc 118  Q
    ||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||    
T  9329018 ggacaacattagatgcatggcagcaatggcaagatgttcataaacatccatcactactggttgtgccacacggctagaatagagtgcaaggtaacaactc 9328919  T
Q  119 agtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagat 218  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  9328918 agtttgggagaaaccgagcgagacatggttgaagtgtaatgtggatgccgcgttccatgaccgtaaccatcttacatcatttgcgtgttgtgttagagat 9328819  T
Q  219 tcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttg 318  Q
    |||| ||||||||||||||| ||||||||||||||| |||| | ||||| ||||||||| |||||||||| ||||||||||||| || ||||||||||||    
T  9328818 tccc-gggacaatttattcgagctcaaacgaaatggcaacgggaaaatatgactgttttggagggggaggcagtagccttactcgctgctattcactttg 9328720  T
Q  319 atgatgt 325  Q
     ||||||    
T  9328719 ctgatgt 9328713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 33 - 302
Target Start/End: Original strand, 16731717 - 16731986
Alignment:
Q  33 gcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaaac 132  Q
    |||||||| ||||||||||||||||||||||| |  |||| ||  ||||||  ||||   ||||||||||||||||||||||||||||||||||||||||    
T  16731717 gcatggcaacaatggcaagaggttcataaacaacactcaccaccagttgtgcaacacatgcataatagagtgcaaggtaacaactcagtttgggagaaac 16731816  T
Q  133 cgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatt 232  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||  || |||||    
T  16731817 cgagcgagacatggttgaagtgcaatgtggatgccgtgttccatgaccgcaaccatattacatcttttgcatgttgtgttagagattcccgcgggcaatt 16731916  T
Q  233 tattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    |||||||||||||||||||||| |  | ||||||| ||| || || |||||||||| |||||||||||||    
T  16731917 tattcgggctcaaacgaaatggcagagggcaaatatgacagtattggagggggaggcagtagccttactc 16731986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 33 - 302
Target Start/End: Original strand, 17709851 - 17710120
Alignment:
Q  33 gcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaaac 132  Q
    |||||||| ||||||||||||||||||||||| |  |||| ||  ||||||  ||||   ||||||||||||||||||||||||||||||||||||||||    
T  17709851 gcatggcaacaatggcaagaggttcataaacaacactcaccaccagttgtgcaacacatgcataatagagtgcaaggtaacaactcagtttgggagaaac 17709950  T
Q  133 cgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatt 232  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||  || |||||    
T  17709951 cgagcgagacatggttgaagtgcaatgtggatgccgtgttccatgaccgcaaccatattacatcttttgcatgttgtgttagagattcccgcgggcaatt 17710050  T
Q  233 tattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    |||||||||||||||||||||| |  | ||||||| ||| || || |||||||||| |||||||||||||    
T  17710051 tattcgggctcaaacgaaatggcagagggcaaatatgacagtattggagggggaggcagtagccttactc 17710120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 29 - 302
Target Start/End: Original strand, 22289021 - 22289294
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    |||||||||||||||||| || |||||||||||||| || |||  |  |||||||  |||||| || ||||||||||||| |||||||||||||||||||    
T  22289021 agatgcatggcagcaatgacaggaggttcataaacaaccctcatcatcggttgtgcaacacgggcagaatagagtgcaagctaacaactcagtttgggag 22289120  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    || ||| | ||||| ||||| ||||||||||||||||||||||| ||||||||| | ||| |||||||||| || |||||||||||||||||||  || |    
T  22289121 aagccgcgtgagacgtggtttaagtgcaatgtggatgccgcgtttcatgaccgtcaacatattacatctttcgcgtgttgtgttagagattcccgtgggc 22289220  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    |||| |||||| |||| ||||||||| |||| ||||||| ||| ||||| ||||||||||| || |||||||||    
T  22289221 aattcattcggactcagacgaaatggcaacgagcaaatatgacagttttggagggggaggtggttgccttactc 22289294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 29 - 254
Target Start/End: Original strand, 1581395 - 1581620
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    |||||| ||||| |||||||||||||||||||||||||| |||| |  ||||||   |||||  || | || ||||||| ||||||||||||||||||||    
T  1581395 agatgcttggcaacaatggcaagaggttcataaacatccctcaccatcggttgtacaacacgaacaaagtatagtgcaacgtaacaactcagtttgggag 1581494  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    |||| ||||||||  ||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| ||||||| |||||| |||   |||     
T  1581495 aaactgagcgagatgtggttgaagtgcaatgtggatgctgcgttccatgaccataaccatattacatcttttgcgtgttgtgctagagactccagcggat 1581594  T
Q  229 aatttattcgggctcaaacgaaatgg 254  Q
    | ||||| ||||||||||||||||||    
T  1581595 agtttatccgggctcaaacgaaatgg 1581620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 86 - 303
Target Start/End: Original strand, 17877245 - 17877462
Alignment:
Q  86 acacggccataatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaac 185  Q
    |||||| |||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||  |||||    
T  17877245 acacgggcataatcgagtgcaaggtaacaactcaatttgggagaaaccgagcgagacgtggttgaaatgcaatgtggatgtcgcgttccatgattgtaac 17877344  T
Q  186 catcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagaggggg 285  Q
    ||| |||||| | |||| ||| | |||| ||| ||||| ||  | || ||||| ||||||||||||| | | || | ||||| ||| || || |||||||    
T  17877345 catattacatttgttgcgtgtggcgttatagactcccatgggaagttcattcgtgctcaaacgaaatcgcagcggggaaatatgacagtattggaggggg 17877444  T
Q  286 aggtagtagccttactca 303  Q
    ||| ||||||||||||||    
T  17877445 aggaagtagccttactca 17877462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 144 - 301
Target Start/End: Original strand, 16098385 - 16098542
Alignment:
Q  144 tggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctc 243  Q
    |||||||||||||||||||| ||  |||||||||||||||||||| |||| |||||||| |||||||||||||| |||||  | ||||||||||||||||    
T  16098385 tggttgaagtgcaatgtggacgcatcgttccatgaccgtaaccatattacttcttttgcgtgttgtgttagagactcccataggcaatttattcgggctc 16098484  T
Q  244 aaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttact 301  Q
    ||||||||||| ||||  |||||| |||  |||| ||||| |||||||||||||||||    
T  16098485 aaacgaaatggaaacgaacaaatatgacaattttggagggagaggtagtagccttact 16098542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 29 - 291
Target Start/End: Complemental strand, 29201356 - 29201100
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    ||||||||| |||||||| ||||||||||||||||| || |||| |  |||||||  |||||| || |||| |||||||||||| | |||||||||||||    
T  29201356 agatgcatgacagcaatgacaagaggttcataaacagccctcaccatcggttgtgcaacacggacaaaatacagtgcaaggtaatagctcagtttgggag 29201257  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattc--ccaggg 226  Q
    ||||||  |||||| ||||||||||||||||| |||||||| ||||||        |||| ||| |||||||||||||||| ||||||| ||      ||    
T  29201256 aaaccgcacgagacgtggttgaagtgcaatgttgatgccgctttccat--------ccatattatatcttttgcatgttgtattagagactcatgtgtgg 29201165  T
Q  227 acaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtag 291  Q
     || |||||||||||||||||||||||  | ||  |||||| ||| ||||| |||||||||||||    
T  29201164 ccagtttattcgggctcaaacgaaatgacagcggacaaatatgacagttttggagggggaggtag 29201100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 93 - 254
Target Start/End: Complemental strand, 30493952 - 30493791
Alignment:
Q  93 cataatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatctta 192  Q
    ||||||| |||||||| ||||||| |||||||| ||||| ||| ||| || ||||| ||||||||| |||||| ||| ||||||||| ||||||| ||||    
T  30493952 cataataaagtgcaagataacaacacagtttggaagaaatcgaacgaaacgtggttaaagtgcaatatggatgtcgcattccatgactgtaaccaactta 30493853  T
Q  193 catcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatgg 254  Q
    ||| |||||| |||||||||||| |||| || || ||||||| || ||||||||||||||||    
T  30493852 catattttgcgtgttgtgttagaaattctcatgggcaatttactcaggctcaaacgaaatgg 30493791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 16098263 - 16098342
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaag 108  Q
    |||||||||||| |||||||||||||||| ||||||||  |||| || |||||||  |||||| ||||||||||||||||    
T  16098263 agatgcatggcatcaatggcaagaggttcctaaacatcattcaccaccggttgtgcaacacgggcataatagagtgcaag 16098342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 176 - 277
Target Start/End: Complemental strand, 34578538 - 34578437
Alignment:
Q  176 tgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgtt 275  Q
    ||||||| | ||| ||||||||||||| ||||||||| || ||||||  || ||||||||||||||||| ||||||||  |||| ||||||| ||| |||    
T  34578538 tgaccgttaacatattacatcttttgcgtgttgtgttcgaaattcccgtgggcaatttattcgggctcagacgaaatgacaacgagcaaatatgacagtt 34578439  T
Q  276 tt 277  Q
    ||    
T  34578438 tt 34578437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 30824763 - 30824668
Alignment:
Q  147 ttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggct 242  Q
    ||||||||||||||||||||  | || |||||| |||  ||| |||||||||||||||||||||||||||| | ||  | | ||||||||||||||    
T  30824763 ttgaagtgcaatgtggatgctacatttcatgactgtagtcatattacatcttttgcatgttgtgttagagactgccgcgaataatttattcgggct 30824668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 11746049 - 11745953
Alignment:
Q  28 cagatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttg 124  Q
    |||||||||| ||  |||||||| |||| |||||||| || |||| || |||||||  |||| | || |||||||||||| ||||||||||||||||    
T  11746049 cagatgcatgacaataatggcaacaggtgcataaacaaccctcaccaccggttgtgcaacacagacagaatagagtgcaaagtaacaactcagtttg 11745953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 32577463 - 32577159
Alignment:
Q  19 ggacatcatcagatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactc 118  Q
    ||||| ||| ||||||||||| ||||||||||||||||||||||||||| ||||||| | |||||  ||||||||| |||| ||||||||||||||||||    
T  32577463 ggacaacattagatgcatggcggcaatggcaagaggttcataaacatccgtcactaccgtttgtgcaacacggccagaatatagtgcaaggtaacaactc 32577364  T
Q  119 agtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagat 218  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  32577363 agtttgggagaaaccgag-gagacatggttgaagtgcaatgtggatgctgcgttccatgaccttaaccatcttacatcttttgcgtgttgtgttagagat 32577265  T
Q  219 tcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttg 318  Q
    |||| ||| ||||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||||||||| ||||||||||| || ||||| ||||||    
T  32577264 tccc-ggggcaatttattcgggctcaaacgaaatggcaacgggcaaatatgactgttttggagggggaggtactagccttactcgctgctatttactttg 32577166  T
Q  319 atgatgt 325  Q
     ||||||    
T  32577165 ctgatgt 32577159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 49119804 - 49119511
Alignment:
Q  19 ggacatcatcagatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactc 118  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||| |    
T  49119804 ggacagcattagatgcatggcagcaatggcaagaggttcataaacatccatcactattggttgtgccacacggccagaatagagtgtaaggtaacaaccc 49119705  T
Q  119 agtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagat 218  Q
    ||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  49119704 agtttgggataaaccaagcgagacatggctgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgtgtgttgtgttagagat 49119605  T
Q  219 tcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttg 318  Q
    |||             |||||||||||||||||||| |||  ||||||| ||||||||| |||||||||| ||||||||||||| || ||||||||||||    
T  49119604 tcc-------------ttcgggctcaaacgaaatggcaacaggcaaatatgactgttttggagggggaggcagtagccttactcgctgctattcactttg 49119518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 28425965 - 28426259
Alignment:
Q  19 ggacatcatcagatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactc 118  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||| |    
T  28425965 ggacagcattagatgcatggcagcaatggcaagaggttcataaacatccatcactattggttgtgccacacggccagaatagagtgtaaggtaacaaccc 28426064  T
Q  119 -agtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagaga 217  Q
     ||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  28426065 cagtttgggataaaccaagcgagacatggctgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgtgtgttgtgttagaga 28426164  T
Q  218 ttcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcacttt 317  Q
    ||||             |||||||||||||||||||| |||  ||||||| ||||||||| |||||||||| ||||||||||||| || |||||||||||    
T  28426165 ttcc-------------ttcgggctcaaacgaaatggcaacaggcaaatatgactgttttggagggggaggcagtagccttactcgctgctattcacttt 28426251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 33 - 302
Target Start/End: Original strand, 49951097 - 49951366
Alignment:
Q  33 gcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaaac 132  Q
    |||||||| ||||||||||||||||||||||| |  |||| ||  ||||||  |||| | ||||||||||||||||||||||||||||||| ||||||||    
T  49951097 gcatggcaacaatggcaagaggttcataaacaacgctcaccaccagttgtgcaacacaggcataatagagtgcaaggtaacaactcagttttggagaaac 49951196  T
Q  133 cgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatt 232  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||| |  || |||||    
T  49951197 cgagcgagacatggttgaagtgcaatgtggatgccgcattccatgaccgcaaccatattacatcttttgcatgctgtgttagagattctcgcggccaatt 49951296  T
Q  233 tattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    |||||||||||||||||||||| | || ||||||| ||| || || |||||||||| |||||||||||||    
T  49951297 tattcgggctcaaacgaaatggcagcgggcaaatatgacagtattggagggggaggcagtagccttactc 49951366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 30 - 318
Target Start/End: Complemental strand, 37246262 - 37245970
Alignment:
Q  30 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaag----gtaacaactcagtttgg 125  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||| |||||||  ||| | ||  ||||| |||||||    ||||||||| |||||||    
T  37246262 gatgcatggcagcaatggcatgaggttcataaacatccctcactaccggttgtgcaacatgaccggaatagggtgcaaggtacgtaacaacttagtttgg 37246163  T
Q  126 gagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattccc-ag 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | |||||||||||||||||| |||| ||    
T  37246162 gagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaatcgtcttacatcctctgcatgttgtgttagagactcccgag 37246063  T
Q  225 ggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttg 318  Q
    ||| ||||||||||||| |||||||||||| |||| ||||||| ||| ||||| |||||||||| |||||||||||||  | ||||||||||||    
T  37246062 gga-aatttattcgggcacaaacgaaatggaaacgggcaaatatgacagttttggagggggaggcagtagccttactcgatgctattcactttg 37245970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 29 - 302
Target Start/End: Original strand, 21321307 - 21321580
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    |||||| ||||||||||||||||| |||||||||||||| ||||||| ||||||   |||||  ||||||||||||||||| |||||| |||||||||||    
T  21321307 agatgcttggcagcaatggcaagatgttcataaacatccctcactaccggttgtacaacacgagcataatagagtgcaaggcaacaacacagtttgggag 21321406  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    ||| ||||||| || ||||||||||||||||||||||  ||||||||||||||||||||| ||||| |||||||||||||| ||||||| || |  ||      
T  21321407 aaatcgagcgaaacgtggttgaagtgcaatgtggatgttgcgttccatgaccgtaaccatattacaacttttgcatgttgtattagagactctcgcggga 21321506  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    |||||||||||||||||||||||||| |||| ||||||| ||| ||||| |||||||||  | |||||||||||    
T  21321507 aatttattcgggctcaaacgaaatggcaacgggcaaatatgacagttttggagggggagacaatagccttactc 21321580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 29 - 302
Target Start/End: Complemental strand, 29656072 - 29655800
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    ||||||||||||||||||| ||||||||||||||||| |||||| || || ||||  ||| || ||||||||| |||||||||| | |||||||||| ||    
T  29656072 agatgcatggcagcaatggaaagaggttcataaacattcatcaccaccgggtgtgcaacatgggcataatagaatgcaaggtaatatctcagtttggaag 29655973  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||  |||||||||||||  ||||  || |    
T  29655972 aaaccgagtgagacatggttgaagtgtaatgtggatgccgcgttccatgatcgtaaccctcttacatcttttg-ttgttgtgttagaggctcccgtgggc 29655874  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    ||||||||||||||||||| |||||| | || ||||||| ||||||||| ||||| |||| |||||||||||||    
T  29655873 aatttattcgggctcaaacaaaatggcagcgggcaaatatgactgttttggagggagaggcagtagccttactc 29655800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 31 - 302
Target Start/End: Complemental strand, 18442549 - 18442279
Alignment:
Q  31 atgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaa 130  Q
    |||||||||| ||||||||||| ||||||||||| || |||  || |||||||  | || | || ||||||||||||||||||||||| |||||||||||    
T  18442549 atgcatggcaacaatggcaagatgttcataaacaacc-tcatcaccggttgtgcaatacagacaaaatagagtgcaaggtaacaactctgtttgggagaa 18442451  T
Q  131 accgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaa 230  Q
    |||||||||||| |||||||||||||||| ||||| ||||||||||||||| |||||| ||||| ||||||| |||||||||||||| ||||| || |||    
T  18442450 accgagcgagacgtggttgaagtgcaatgcggatgtcgcgttccatgaccgcaaccatattacaacttttgcgtgttgtgttagagactcccatgggcaa 18442351  T
Q  231 tttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    |||||||||||||||||||||||| | || | ||||| ||| || || |||||||||| |||||||||||||    
T  18442350 tttattcgggctcaaacgaaatggaagcgggaaaatatgacagtattggagggggaggcagtagccttactc 18442279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 2064623 - 2064906
Alignment:
Q  19 ggacatcatcagatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactc 118  Q
    ||||||| | ||||||||| || |||||||||||||||| |||||| || |||| |  |||||||  |||||| || |||||||||||||||||||||||    
T  2064623 ggacatctttagatgcatgacaacaatggcaagaggttcgtaaacaaccttcaccatcggttgtgcaacacggacaaaatagagtgcaaggtaacaactc 2064722  T
Q  119 agtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagat 218  Q
    |||||||||||||| ||||||| | |||||||||||||||||||| ||| |||||||||||||||||||| ||||||| | ||| ||||||||||||||     
T  2064723 agtttgggagaaactgagcgagtcgtggttgaagtgcaatgtggacgccacgttccatgaccgtaaccatattacatcctctgcgtgttgtgttagagac 2064822  T
Q  219 tcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    ||||  ||| ||||||||||||||||||| |||||  | || ||||||| ||| || ||  ||||||||| |||||||||||||    
T  2064823 tcccgcggataatttattcgggctcaaacaaaatgacagcgggcaaatatgacagtattgaagggggaggcagtagccttactc 2064906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 29 - 302
Target Start/End: Complemental strand, 28538192 - 28537921
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    ||||||||| || ||||||||||||||||||||||| |  |||| || | ||||   |||||| || | |||||||||||||||||| ||||||||||||    
T  28538192 agatgcatgtcaacaatggcaagaggttcataaacaccactcaccaccgattgtacaacacgggcacagtagagtgcaaggtaacaattcagtttgggag 28538093  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    ||||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |||||| |||||| |||||||||||||| ||||| || |    
T  28538092 aaaccgaacgagacgtggttgaagtgcaatgtggatgctgcgttccatgatcgtaaccatattacatattttgcgtgttgtgttagagactcccacgggc 28537993  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    |||||||||||||||||||||||||| | || | ||||| ||  ||||  |||||||||| |||||||||||||    
T  28537992 aatttattcgggctcaaacgaaatggcagcgggaaaatatgatagttt--gagggggaggcagtagccttactc 28537921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 29 - 302
Target Start/End: Original strand, 55734789 - 55735062
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    ||||| |||||| ||||||||||| ||||||||||| ||||||  |  |||||||  | || | || ||||||||||||||||||||||| |||||||||    
T  55734789 agatgtatggcaacaatggcaagatgttcataaacaaccatcatcatcggttgtgcaatacagacaaaatagagtgcaaggtaacaactcggtttgggag 55734888  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    |||||||||||||  |||||||||||||||||||||| |||| ||||||| |  |||||| ||||||||||||| |||||||||||||| ||||| |  |    
T  55734889 aaaccgagcgagatgtggttgaagtgcaatgtggatgtcgcgctccatgatctcaaccatattacatcttttgcgtgttgtgttagagactcccatgagc 55734988  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    ||||| |||||||||||||||||||| | || ||||||| ||| || || |||||||||| |||||||||||||    
T  55734989 aatttgttcgggctcaaacgaaatggaagcgagcaaatatgacagtattggagggggaggcagtagccttactc 55735062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 38 - 325
Target Start/End: Complemental strand, 51735370 - 51735082
Alignment:
Q  38 gcagcaatggcaagaggttcataaacatccatcactactgg-ttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaaaccgag 136  Q
    |||||||||||||||||||||||||||||| || |   | | |||||  |||  | || ||||| |||||| |||||| ||||||||||| |||||||||    
T  51735370 gcagcaatggcaagaggttcataaacatccctcccccatcgattgtgcaacataggcagaatagggtgcaatgtaacatctcagtttgggcgaaaccgag 51735271  T
Q  137 cgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttatt 236  Q
    |||||| |||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||  |||||||||||||| | ||   |||||||||||    
T  51735270 cgagacgtggttgaagtgcaacgtggatgccgcgttccatgattgtaaccatcttacatcttttgtgtgttgtgttagagacttccgttgacaatttatt 51735171  T
Q  237 cgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttgatgatgt 325  Q
    |||||| ||||||||||  | |||||||||| ||| ||||| |||||||||| |||||||||||||  | | |||||||||| ||||||    
T  51735170 cgggcttaaacgaaatgacagcgtgcaaatatgacagttttggagggggaggcagtagccttactcgatgccattcactttgctgatgt 51735082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 29 - 302
Target Start/End: Complemental strand, 51259937 - 51259663
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    ||||||||||||||||||||| |||||||||||||| || |||  |  | ||| |  |||||| || ||||||||||||| |||||||||||||||||||    
T  51259937 agatgcatggcagcaatggcaggaggttcataaacaaccctcatcatcgattgcgcaacacgggcagaatagagtgcaagctaacaactcagtttgggag 51259838  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    |||||| | ||||| |||||||| |||||||||||||||||||| ||||||||| | ||| |||||||||| | ||||||||||||||| || |  || |    
T  51259837 aaaccgcgtgagacgtggttgaactgcaatgtggatgccgcgtttcatgaccgtcaacatattacatctttcgtatgttgtgttagagactctcgtgggc 51259738  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttaga-gggggaggtagtagccttactc 302  Q
    |||| ||||||||||||||||||||| |||| ||||||| ||| ||||| || |||||||| ||| |||||||||    
T  51259737 aattcattcgggctcaaacgaaatggcaacgagcaaatatgacagttttggaggggggaggcagttgccttactc 51259663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 29 - 302
Target Start/End: Original strand, 56065409 - 56065682
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    ||||||||||||||||||||| |||||||||||||| || ||   |  | |||||  |||||| || ||||||||||||| |||||||||||||||||||    
T  56065409 agatgcatggcagcaatggcaggaggttcataaacaaccctcgtcatcgattgtgcaacacgggcagaatagagtgcaagctaacaactcagtttgggag 56065508  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    |||| | | ||||| |||||||||||||||||||||| || ||| ||||||||| | ||| |||||||||| || |||||| ||||||| ||||  || |    
T  56065509 aaactgtgtgagacgtggttgaagtgcaatgtggatgtcgtgtttcatgaccgtcaacatattacatctttcgcgtgttgttttagagactcccgtgggc 56065608  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    |||| ||||||||||||||||||||  |||| ||||||| ||| ||||| |||||||||| ||| |||||||||    
T  56065609 aattcattcgggctcaaacgaaatgacaacgagcaaatatgacagttttggagggggaggcagttgccttactc 56065682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 93 - 287
Target Start/End: Complemental strand, 43840650 - 43840456
Alignment:
Q  93 cataatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatctta 192  Q
    ||||||||||||||||  ||||||| ||||||||||| ||||  |||||| |||||||||| ||| ||||||||||||||| |||| | |||||||||||    
T  43840650 cataatagagtgcaagacaacaacttagtttgggagagaccgcacgagacgtggttgaagttcaacgtggatgccgcgttctatgagcataaccatctta 43840551  T
Q  193 catcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggag 287  Q
    |||||||||| | |||||||||||| ||||  |||||||||||||||| ||||||||||||| | ||  |||||| ||| || || |||||||||    
T  43840550 catcttttgcgttttgtgttagagactcccgtggacaatttattcggggtcaaacgaaatggcagcggacaaatatgacagtgttggagggggag 43840456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 121 - 302
Target Start/End: Complemental strand, 41835626 - 41835445
Alignment:
Q  121 tttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattc 220  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||| |||||| ||| ||||||||| ||||| ||||||| |||||||||||||| ||    
T  41835626 tttgggagaaatcgagcgagacgtggttgaagtgcaatgtggatgccacgttccttgaacgtaaccatattacaacttttgcgtgttgtgttagagactc 41835527  T
Q  221 ccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
     |   |||||||||||||||||||||| |||||  | |  ||||||| ||| ||||| |||||||| | |||||||||||||    
T  41835526 tcgcagacaatttattcgggctcaaacaaaatgacagctggcaaatatgacagttttggagggggatgcagtagccttactc 41835445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 29 - 302
Target Start/End: Original strand, 88339 - 88612
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    ||||||||| || ||||||||||| |||||||||||||| ||||||| ||||||   |||||  ||||||||||||||||| |||||| |||||||||||    
T  88339 agatgcatgacaacaatggcaagatgttcataaacatccctcactaccggttgtacaacacgagcataatagagtgcaaggcaacaacacagtttgggag 88438  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||| || |  || |    
T  88439 aaaccgagcgagacatggttgaagtgcaatgtggatgctgcgttccatgaccgtaaccatattacaacttttgcatgttgtgttagagactctcgcgggc 88538  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    |||||||||||||||||| ||||||| || | ||||||| ||| ||||| |||||||||| |||||||||||||    
T  88539 aatttattcgggctcaaatgaaatggcaatgggcaaatatgacagttttggagggggaggcagtagccttactc 88612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 31 - 301
Target Start/End: Complemental strand, 12131043 - 12130773
Alignment:
Q  31 atgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaa 130  Q
    |||||||||| ||||||||||||||||||||||| ||||||| || |||||||  ||||||    || ||||||||||||||||||||| ||||||||||    
T  12131043 atgcatggcaacaatggcaagaggttcataaacaaccatcaccaccggttgtgcaacacgggacaaacagagtgcaaggtaacaactcaatttgggagaa 12130944  T
Q  131 accgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaa 230  Q
    | |||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||  ||||||||  |||||||||||||| ||||  || |||    
T  12130943 atcgagcgagacgtggttgaagtgcaatgtggatgccccgttccatgaccgtaaccatattctatcttttgggtgttgtgttagagactcccgcgggcaa 12130844  T
Q  231 tttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttact 301  Q
     ||||||||||||||||||||||  | || ||||||| ||  || || |||||||||| ||||||||||||    
T  12130843 attattcgggctcaaacgaaatgacagcgagcaaatatgatagtgttggagggggaggcagtagccttact 12130773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 29 - 326
Target Start/End: Complemental strand, 34696309 - 34696014
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    |||||||||||| ||||||||||||||||||| ||| ||||||| | ||   |||   ||||  ||||||||| ||||||||||||||||||||||||||    
T  34696309 agatgcatggcaacaatggcaagaggttcatacacaaccatcaccattgccggtgcatcacgaacataatagaatgcaaggtaacaactcagtttgggag 34696210  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    |||| | ||||| | |||||||||| ||| ||||||||| | |||||||||| ||| ||| ||||||||||||| ||||| |||||||| ||||  || |    
T  34696209 aaactgcgcgagtcgtggttgaagtacaacgtggatgccacattccatgaccataagcatattacatcttttgcgtgttgcgttagagactcccgtgggc 34696110  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttgatgatgtc 326  Q
    ||||||||||||||||| ||  |||| | || ||||||| ||| ||||| |||||||||| ||||||||||||||   | |||||||||| |||||||    
T  34696109 aatttattcgggctcaatcg--atggcagcgggcaaatatgacagttttggagggggaggcagtagccttactcaaggccattcactttgctgatgtc 34696014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 29 - 326
Target Start/End: Complemental strand, 34718721 - 34718426
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    |||||||||||| ||||||||||||||||||| ||| ||||||| | ||   |||   ||||  ||||||||| ||||||||||||||||||||||||||    
T  34718721 agatgcatggcaacaatggcaagaggttcatacacaaccatcaccattgccggtgcatcacgaacataatagaatgcaaggtaacaactcagtttgggag 34718622  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    |||| | ||||| | |||||||||| ||| ||||||||| | |||||||||| ||| ||| ||||||||||||| ||||| |||||||| ||||  || |    
T  34718621 aaactgcgcgagtcgtggttgaagtacaacgtggatgccacattccatgaccataagcatattacatcttttgcgtgttgcgttagagactcccgtgggc 34718522  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttgatgatgtc 326  Q
    ||||||||||||||||| ||  |||| | || ||||||| ||| ||||| |||||||||| ||||||||||||||   | |||||||||| |||||||    
T  34718521 aatttattcgggctcaatcg--atggcagcgggcaaatatgacagttttggagggggaggcagtagccttactcaaggccattcactttgctgatgtc 34718426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 31 - 302
Target Start/End: Complemental strand, 18345879 - 18345621
Alignment:
Q  31 atgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaa 130  Q
    ||||||||||| ||||||||||||||||||||||||  |||| || |||||||  |||||| || |||||||||||||            ||||| ||||    
T  18345879 atgcatggcagtaatggcaagaggttcataaacatcattcaccaccggttgtgcaacacgggcagaatagagtgcaag------------tttggaagaa 18345792  T
Q  131 accgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaa 230  Q
    ||||| ||||||||||||||||||||||||||| ||  |||||||||| ||||||||| |||| |||||||| |||||||||||||| | ||  ||  ||    
T  18345791 accgaacgagacatggttgaagtgcaatgtggacgcaacgttccatgagcgtaaccatattacttcttttgcgtgttgtgttagagacttccgtgggtaa 18345692  T
Q  231 tttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    |||||| |  |||||||||||||||||||  |||||| ||| ||||| |||||||||| |||||||||||||    
T  18345691 tttatttgaactcaaacgaaatggtaacggacaaatatgacagtttt-gagggggaggcagtagccttactc 18345621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 96 - 287
Target Start/End: Complemental strand, 44017658 - 44017467
Alignment:
Q  96 aatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacat 195  Q
    |||| |||||||||||||| || ||||| | |||| |||||||||||||||||||||||||||| | || ||||||||  ||| | | ||||||||||||    
T  44017658 aataaagtgcaaggtaacagctaagttttgaagaagccgagcgagacatggttgaagtgcaatgcgaattccgcgttctgtgatcatgaccatcttacat 44017559  T
Q  196 cttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggag 287  Q
    |||| || |||||||||||||| ||||  || |||||||||||||||||||  |||||  | |||||||||| ||| ||||| |||||||||    
T  44017558 ctttcgcgtgttgtgttagagactcccgtgggcaatttattcgggctcaaataaaatgacaccgtgcaaatatgacagttttggagggggag 44017467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 298
Target Start/End: Original strand, 26198471 - 26198742
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    ||||||||| || ||||| ||||||||||||||   ||| |||| ||||| ||||  |||||  || |||||| ||||| |||||| || |||| |||||    
T  26198471 agatgcatgacatcaatgacaagaggttcataa---tcc-tcaccactgggtgtgcaacacgaacagaatagaatgcaaagtaacagcttagttcgggag 26198566  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttc------catgaccgtaaccatcttacatcttttgcatgttgtgttagagattccc 222  Q
    |||  |  |||||| ||||||||||| | |||||||| |||||||      ||| ||| ||| ||| || |||||||||  || ||||||||||| ||      
T  26198567 aaattgcacgagacgtggttgaagtgtattgtggatgtcgcgttccattttcattaccataatcatattgcatcttttgtgtgctgtgttagagactcat 26198666  T
Q  223 agggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagcctt 298  Q
      || ||||||||||| |||||||  |||||||| ||  |||||| ||| ||||| |||||||| | |||||||||    
T  26198667 gtgggcaatttattcgagctcaaataaaatggtagcgaacaaatatgacagttttggagggggatgcagtagcctt 26198742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 9709910 - 9709982
Alignment:
Q  230 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    |||||||| |||||||||||||||| ||||  |||||| ||| ||||| |||||||||| ||| |||||||||    
T  9709910 atttattcaggctcaaacgaaatggcaacgaacaaatatgacagttttggagggggaggcagttgccttactc 9709982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 30 - 325
Target Start/End: Original strand, 7127004 - 7127299
Alignment:
Q  30 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 129  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||| |||||||  |||| |||| ||||| | |||||||||||||| |||||||||||    
T  7127004 gatgcatggcagcaatggcatgaggttcataaacatccctcactaccggttgtgcaacacagccagaatagggggcaaggtaacaacttagtttgggaga 7127103  T
Q  130 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 229  Q
    | ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| | |||||||||||||||||| || | |||  |    
T  7127104 agccgagcgagacatggttgaagtggaatgtggatgccgcgttccatgaacgtaaccgtcttacatcctctgcatgttgtgttagagactctcgggggaa 7127203  T
Q  230 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttgatgatgt 325  Q
    ||||||||| || |||| ||||||| |||| ||||||| ||  ||||| ||||||||||||||||||||||||  | |||||||||||| ||||||    
T  7127204 atttattcgtgcacaaatgaaatggaaacgggcaaatatgaaagttttggagggggaggtagtagccttactcgatgctattcactttgctgatgt 7127299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 29 - 302
Target Start/End: Complemental strand, 478463 - 478190
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||  |||| | || |||||||| |||||||||| |||| ||||||||    
T  478463 agatgcatggcagcaatggcaagaggttcataaacatccatcaccagtggttgtgcaacacaggcaaaatagagtccaaggtaacatctcaatttgggag 478364  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    ||||| |||||||  ||||||||||| |||||||||||  ||||||||||||  |||||||| ||||||||||  |||||||||||||||| ||| || |    
T  478363 aaaccaagcgagatgtggttgaagtgtaatgtggatgcaacgttccatgaccacaaccatctaacatcttttgtgtgttgtgttagagatttccatggtc 478264  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    ||||||| ||||||||||| |||||| |||| ||||||| ||| ||||| |||||||||| |||||||||||||    
T  478263 aatttatccgggctcaaacaaaatggcaacgggcaaatatgacagttttggagggggaggcagtagccttactc 478190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 33 - 325
Target Start/End: Complemental strand, 8451526 - 8451234
Alignment:
Q  33 gcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaaac 132  Q
    |||||||| ||||||||||||||||||||||| ||||||| || |||||||  ||||   || ||||||||||||||| | |  ||| ||||||||||||    
T  8451526 gcatggcaacaatggcaagaggttcataaacagccatcaccacaggttgtgcaacaccagcaaaatagagtgcaaggtcatagttcaatttgggagaaac 8451427  T
Q  133 cgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatt 232  Q
    || ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||    ||||||||    
T  8451426 cgtgcgagacgtggttgaagtgtaatgtggatgccgcgttccatgaccgtaaccattttacatcttttggatgttgtgttagagactcttgtggacaatt 8451327  T
Q  233 tattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttgatgatgt 325  Q
    ||||||||||||||| ||| || | || ||||||| ||| || || |||||||||| |||||| ||||||  ||| |||||||| | ||||||    
T  8451326 tattcgggctcaaacaaaaaggaagcgggcaaatatgacagtgttggagggggaggcagtagctttactcgattccattcacttcgctgatgt 8451234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 29 - 302
Target Start/End: Complemental strand, 40589122 - 40588864
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    |||||||||||| ||||||||||||||||||||||| || |||| || |||||||  |||||| ||||| ||||||||||||||||||||||||||||||    
T  40589122 agatgcatggcaacaatggcaagaggttcataaacagccctcaccaccggttgtgcaacacgggcataacagagtgcaaggtaacaactcagtttgggag 40589023  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||| | ||| ||||||| ||| |             ||||  |    
T  40589022 aaaccgagtgagacgtggttgaagtgcaacgtggatgccgcgttccatgaacgtaaccatataacaacttttgcttgtag-------------cagg--c 40588938  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    |||||||||||||||||||||||||| | || |||||||  || ||||| |||||||||| ||||||| |||||    
T  40588937 aatttattcgggctcaaacgaaatggcagcgggcaaatataacagttttggagggggaggcagtagccgtactc 40588864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 31 - 301
Target Start/End: Original strand, 23853726 - 23853984
Alignment:
Q  31 atgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaa 130  Q
    ||||||| || ||||||||||||||||||||||||   |||| || |||||||  |||| | ||||||||||||||||            ||||||||||    
T  23853726 atgcatgacaacaatggcaagaggttcataaacattattcaccacaggttgtgcaacacaggcataatagagtgcaag------------tttgggagaa 23853813  T
Q  131 accgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaa 230  Q
    ||||| |||||| |||||||||||| ||||||| ||||||||||||||||||||| || ||||||||||||| |||| ||||||||| ||||  || |||    
T  23853814 accgaacgagacgtggttgaagtgcgatgtggacgccgcgttccatgaccgtaactatattacatcttttgcgtgttatgttagagactcccgtgggcaa 23853913  T
Q  231 tttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttact 301  Q
    |||||||||| ||||||||||||  | ||   ||||| ||| ||||| ||||| |||| ||||||||||||    
T  23853914 tttattcgggttcaaacgaaatgacagcggaaaaatatgacagttttggagggtgaggcagtagccttact 23853984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 139 - 302
Target Start/End: Original strand, 13414913 - 13415076
Alignment:
Q  139 agacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcg 238  Q
    |||| |||||||||||||||||||||| || ||||||||| ||||||||| ||||| ||||||  |||| | ||||||| |  |  || |||||||||||    
T  13414913 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgtttttttagagactttcgcgggcaatttattcg 13415012  T
Q  239 ggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    |||||||||||||||| | ||  |||||| ||| ||||| |||||||||| |||||||||||||    
T  13415013 ggctcaaacgaaatggcagcggacaaatatgacagttttggagggggaggcagtagccttactc 13415076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 183 - 325
Target Start/End: Complemental strand, 185842 - 185702
Alignment:
Q  183 aaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagg 282  Q
    |||| ||||||||||| |||| ||||||| ||||| ||| ||||| |||||||  ||||||||||||||||| |||| ||||||| ||| ||||| || |    
T  185842 aaccgtcttacatcttctgcacgttgtgtaagagactccgaggga-aatttatctgggctcaaacgaaatggaaacgggcaaatatgacagttttgga-g 185745  T
Q  283 gggaggtagtagccttactcacttctattcactttgatgatgt 325  Q
    |||||| |||||||||||||  | |||||||||||| ||||||    
T  185744 gggaggaagtagccttactcgatactattcactttgttgatgt 185702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 7e-74; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 29 - 325
Target Start/End: Original strand, 36733473 - 36733772
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatcca-tcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttggga 127  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| |||||||  ||| ||||| |||||| |||||||||| |||| ||||| |||    
T  36733473 agatgcatggcagcaatggcaagaggttcataaacatcccctcactaccggttgtgcaacaaggccaaaatagaatgcaaggtaataactgagtttcgga 36733572  T
Q  128 gaaaccgagcgagacatggttgaagtgcaat--gtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagg 225  Q
    |||||||||||||||||||||||||||||||  |||||||||||||| ||||||  ||||||||||||| ||||||  |||||||||||||| || |  |    
T  36733573 gaaaccgagcgagacatggttgaagtgcaatatgtggatgccgcgtttcatgactataaccatcttacaccttttgtgtgttgtgttagagactctcgtg 36733672  T
Q  226 gacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttgatgatgt 325  Q
    |||||||||||||||||||||| |||||  |||| | ||||| | | ||||| |||||||||| ||||| |||||||| |  ||||||||||| ||||||    
T  36733673 gacaatttattcgggctcaaacaaaatgacaacgggtaaatatggcagttttggagggggaggcagtagtcttactcaatgttattcactttgctgatgt 36733772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 29 - 302
Target Start/End: Original strand, 25682431 - 25682704
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    ||||||||||||||||||||||||| |||||||||| || | |   | | |||||  ||| ||  | |||||||||||||| || |||||| ||||||||    
T  25682431 agatgcatggcagcaatggcaagagattcataaacaacccttatcgccgattgtgcaacatgggtagaatagagtgcaaggcaagaactcaatttgggag 25682530  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    |||||| | ||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||  || |    
T  25682531 aaaccgtgtgagacatggttgaagtgcaatgtggatgccgtgtttcatgaacgtaaccatcttacatcttttgcgtgttgtgttagagactcccgtgggc 25682630  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    |||||||  ||||||||||||||||| |||| ||||||| ||| || || |||||||||| |||||||||||||    
T  25682631 aatttatctgggctcaaacgaaatggcaacgggcaaatatgacagtgttggagggggaggcagtagccttactc 25682704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 29 - 302
Target Start/End: Original strand, 51113095 - 51113368
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    ||||||||||||||||||||| |||||||||||||| || |||  |  | |||||  |||||| || ||||||||||||| |||||||||||||||||||    
T  51113095 agatgcatggcagcaatggcaggaggttcataaacagccctcatcatcgattgtgcaacacgggcagaatagagtgcaagctaacaactcagtttgggag 51113194  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    ||| || | ||||| ||||| ||||||||||||||||||| ||| ||||||||| | ||| |||||||||| || |||||||||||||| ||||  || |    
T  51113195 aaatcgtgtgagacgtggttaaagtgcaatgtggatgccgtgtttcatgaccgtcaacatattacatctttcgcgtgttgtgttagagactcccgtgggc 51113294  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    |||| |||||| |||||||||||||| |||| |||||||  || ||||| |||||||||| ||| |||||||||    
T  51113295 aattcattcggactcaaacgaaatggcaacgagcaaatataaccgttttggagggggaggcagttgccttactc 51113368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 29 - 302
Target Start/End: Original strand, 4394939 - 4395211
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    ||||||||| || ||||||||||||||| |||||||||| || |||| |||  ||  ||||   ||||| ||||||||||  ||||||||||||||||||    
T  4394939 agatgcatgacaacaatggcaagaggtttataaacatccctcgctaccggtaatgcaacacatgcataacagagtgcaagacaacaactcagtttgggag 4395038  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    |||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||| ||||||||||| || |  || |    
T  4395039 aaaccgagcgagacgtggctgaagtgcaatgtggaagccgcgttccatgaccgtaaccatatcacaacttttgcatgctgtgttagagactctcgtgggc 4395138  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    ||||||| ||||||||| |||||||| | || ||||||| ||  ||||| || ||||||| | |||||||||||    
T  4395139 aatttatccgggctcaatcgaaatggcagcgggcaaatatgagagtttt-gaaggggaggcactagccttactc 4395211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 45 - 302
Target Start/End: Complemental strand, 48950115 - 48949858
Alignment:
Q  45 tggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacat 144  Q
    ||||| |||||||||||||| || |||  |  | |||||  |||||| || ||||||||||||| ||||||||||| ||||||||||||| | ||||| |    
T  48950115 tggcaggaggttcataaacaaccctcatcatcgattgtgcaacacgggcagaatagagtgcaagctaacaactcagattgggagaaaccgcgtgagacgt 48950016  T
Q  145 ggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctca 244  Q
    |||||||||||||||||||||||||||| ||||||||| | ||| |||||||||| || |||||||||||||| ||||   | ||||| |||||||||||    
T  48950015 ggttgaagtgcaatgtggatgccgcgtttcatgaccgtcaacatattacatctttcgcgtgttgtgttagagactcccgttggcaattcattcgggctca 48949916  T
Q  245 aacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    |||||||||| |||| ||||||| ||  ||||| |||||||||| ||| |||||||||    
T  48949915 aacgaaatggcaacgagcaaatatgaaagttttggagggggaggcagttgccttactc 48949858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 24538279 - 24538544
Alignment:
Q  19 ggacatcatcagatgcatggcagcaatggcaagaggtt-cataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaact 117  Q
    ||||||||| ||||||||| || ||||||||||||||| ||||||||||| |||| ||  ||||||  |||  | || ||||||||||||||||||| ||    
T  24538279 ggacatcattagatgcatgacaacaatggcaagaggtttcataaacatccctcaccaccagttgtgcaacataggcagaatagagtgcaaggtaacatct 24538378  T
Q  118 cagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagaga 217  Q
    ||||||| |||||||| || ||||| |||| ||| ||||||||||||||||||||| || ||||||||||  ||| ||||||||  ||||||||||||||    
T  24538379 cagtttgagagaaaccaagtgagacctggtcgaaatgcaatgtggatgccgcgttctataaccgtaaccaagttagatcttttgtgtgttgtgttagaga 24538478  T
Q  218 ttcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagaggg 283  Q
     ||||  ||| |||||||||||||||||||||| ||| | |  ||||||||||| ||||| |||||    
T  24538479 ctcccgtggataatttattcgggctcaaacgaattggcagcaggcaaatacgacagttttggaggg 24538544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 29 - 247
Target Start/End: Original strand, 5609119 - 5609337
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    |||||||||| ||||||||||||||||||||||||  ||  |||||  |||  |   |||| | ||||||||||||||||| ||||||||||||||||||    
T  5609119 agatgcatggtagcaatggcaagaggttcataaacggcctccactatcggtaatacaacacaggcataatagagtgcaaggcaacaactcagtttgggag 5609218  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||| ||||| |||| || || |||| |||||| || || |  |    
T  5609219 aaaccgagcgagacgtggttgaagtgcaatgtggatgtcgcgttccatgactgtaaccatattacaactttcgcgtgctgtgctagagactcacacgagc 5609318  T
Q  229 aatttattcgggctcaaac 247  Q
    |||||||||||||||||||    
T  5609319 aatttattcgggctcaaac 5609337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 29 - 301
Target Start/End: Original strand, 44527045 - 44527305
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    |||||||||||| ||||||||||||||||||||| ||   | || |  |||||||  |||||| ||||||||||||||||            ||||||||    
T  44527045 agatgcatggcaacaatggcaagaggttcataaaaatagtttaccatcggttgtgcaacacgggcataatagagtgcaag------------tttgggag 44527132  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    ||||||| |||| ||||||| |||||||||||||| ||||||||||||||| |||||||| ||||||||||||| |||||||||||||| ||    || |    
T  44527133 aaaccgaccgagtcatggttaaagtgcaatgtggacgccgcgttccatgactgtaaccatattacatcttttgcgtgttgtgttagagactcttgtgggc 44527232  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttact 301  Q
    ||||||||||||||||||| |||||| | ||  |||||| ||| ||||| |||||||||| ||||||||||||    
T  44527233 aatttattcgggctcaaacaaaatggcagcggacaaatatgacagttttggagggggaggcagtagccttact 44527305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 119 - 302
Target Start/End: Original strand, 52109324 - 52109507
Alignment:
Q  119 agtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagat 218  Q
    |||||||||||||||||   |||| ||||||||||| |||||||| |  | ||||||||||||||| ||||||| ||||||||||||||||||||||||     
T  52109324 agtttgggagaaaccgacaaagacgtggttgaagtgtaatgtggacgttgtgttccatgaccgtaatcatcttatatcttttgcatgttgtgttagagac 52109423  T
Q  219 tcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    |||   ||||||||||||| |||||||||||||||| | || ||||||| ||   |||| |||||||| | |||||||||||||    
T  52109424 tcctgtggacaatttattcaggctcaaacgaaatggcagcgggcaaatatgatcattttggagggggatgcagtagccttactc 52109507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 161 - 302
Target Start/End: Original strand, 48166149 - 48166290
Alignment:
Q  161 ggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgt 260  Q
    ||||||| |||||||||||||||||||||||||||||||||  |||||||||||||| ||||  || ||||||||||||||||||| ||||||| | ||     
T  48166149 ggatgccacgttccatgaccgtaaccatcttacatcttttgtgtgttgtgttagagactcccgtggtcaatttattcgggctcaaatgaaatggcagcga 48166248  T
Q  261 gcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    ||||||| ||| ||||| ||| |||||  | |||||||||||    
T  48166249 gcaaatatgacagttttggagtgggagacaatagccttactc 48166290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 302
Target Start/End: Complemental strand, 16817108 - 16816934
Alignment:
Q  127 agaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccaggg 226  Q
    |||||||||| ||||  |||||||||||||||| ||| ||||||||||||| | |||||||| ||||||||||||  | |||| ||||||| || |  |     
T  16817108 agaaaccgagtgagatgtggttgaagtgcaatgcggacgccgcgttccatgtctgtaaccatattacatcttttgtgtattgttttagagactctcgcgt 16817009  T
Q  227 acaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
     ||||||||||| |||||| | |||||| |  | ||||||| |||  |||| || ||||||| |||||||||||||    
T  16817008 gcaatttattcgagctcaatcaaaatggcagtgggcaaatatgacaattttgga-ggggaggcagtagccttactc 16816934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 17507308 - 17507356
Alignment:
Q  99 agagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggt 147  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||    
T  17507308 agagtgcaaggtaatatctcagtttgggagaaaccgagcgagacatggt 17507356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 29 - 302
Target Start/End: Original strand, 14679939 - 14680215
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    |||||||||||  |||||| |||||||||||||||| |  |||| ||| ||||||  |||||  ||||||||||||||||||||||||||||||||||||    
T  14679939 agatgcatggccacaatggaaagaggttcataaacaactctcaccactagttgtgcaacacgagcataatagagtgcaaggtaacaactcagtttgggag 14680038  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattccc---agg 225  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||  |||||||||||||||||||||||||||| ||||     |    
T  14680039 aaaccgagcgagacatggttgaagtgcaatgtggataccgcgttccatgaccgcaaccacattacatcttttgcatgttgtgttagagactcccgcggcg 14680138  T
Q  226 gacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    | |||||||||  |||||||| ||||||| | || | ||||| ||| || || |||||||||| |||||||||||||    
T  14680139 ggcaatttattatggctcaaatgaaatggcagcgggaaaatatgacagtattggagggggaggcagtagccttactc 14680215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 29 - 301
Target Start/End: Original strand, 28106919 - 28107191
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    |||||||||||| |||||||||||||||||||||||||  |||| | ||||||||  ||||   || ||||||||||||||||||| |||||||||||||    
T  28106919 agatgcatggcaacaatggcaagaggttcataaacatctttcaccattggttgtgcaacacatgcaaaatagagtgcaaggtaacatctcagtttgggag 28107018  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    ||||| | |||||| |||||||||||||| | ||| ||| |||||||||| |||||||||||||||||||| |  |||||||||||||| ||||  ||||    
T  28107019 aaaccaaacgagacgtggttgaagtgcaacgaggaagccacgttccatgatcgtaaccatcttacatctttcgtgtgttgtgttagagactcccgtggac 28107118  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttact 301  Q
    ||||||||| |||||||||||||||| | ||  || ||| ||| ||||| |||||||||| ||||||||||||    
T  28107119 aatttattcaggctcaaacgaaatggcagcggacagatatgacagttttggagggggaggcagtagccttact 28107191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 110 - 324
Target Start/End: Complemental strand, 15606320 - 15606106
Alignment:
Q  110 taacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgt 209  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| || || || ||||||||| ||||||||||| | ||||||    
T  15606320 taacaactcagtttgggagaaaccgcacgagacatggttgaagtgcaatgtggatgccgcatttcacgatcgtaaccatattacatctttttcgtgttgt 15606221  T
Q  210 gttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttcta 309  Q
    |||||||| ||||| || ||| |||||||||||||||| |||||| | || | ||| | ||| ||||| |||||||||| |||||||||||||  | | |    
T  15606220 gttagagactcccatgggcaacttattcgggctcaaacaaaatggcagcgggaaaacatgacagttttggagggggaggcagtagccttactcgatgcca 15606121  T
Q  310 ttcactttgatgatg 324  Q
    ||||||||| |||||    
T  15606120 ttcactttgttgatg 15606106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 11731989 - 11731885
Alignment:
Q  96 aatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacat 195  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||| |||| |||||||||||| |||| ||| ||||||||| ||||| || ||||||    
T  11731989 aatatagtgcaaggtaacaactcagcttgggagaaactgagcgagacgtggtggaagtgcaatgtagatgacgcattccatgactgtaacaatattacat 11731890  T
Q  196 ctttt 200  Q
    |||||    
T  11731889 ctttt 11731885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 29 - 197
Target Start/End: Complemental strand, 30802377 - 30802209
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    ||||||||| || |||||| ||||  |||||||||| || |||| |  |||||||  |||| | || |||||||||||||||| |||||||||||||||     
T  30802377 agatgcatgacaacaatggtaagacattcataaacagccctcaccaacggttgtggaacacaggcagaatagagtgcaaggtaccaactcagtttgggaa 30802278  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatct 197  Q
    ||||  |||||||  | ||| ||||||| |||||||||||| ||| ||||  |||||||||||||||||    
T  30802277 aaactaagcgagaggtagttaaagtgcattgtggatgccgcattcaatgaatgtaaccatcttacatct 30802209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 302
Target Start/End: Complemental strand, 15053446 - 15053309
Alignment:
Q  165 gccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaa 264  Q
    |||||||| |||| | |||||||||||||||||||||| |||||||||||||| | |   ||||||||||||||||||||||| | |||  | || | ||    
T  15053446 gccgcgtttcatgtcggtaaccatcttacatcttttgcgtgttgtgttagagacttcagtggacaatttattcgggctcaaacaagatgacagcgggtaa 15053347  T
Q  265 atacgactgttttagagggggaggtagtagccttactc 302  Q
    ||| ||  || || |||||||||| |||||||||||||    
T  15053346 atatgatagtgttggagggggaggcagtagccttactc 15053309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 165
Target Start/End: Complemental strand, 19364352 - 19364217
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    ||||||||| || ||||||| ||||||||||||||| || |||| |  |  ||||  |||||  || ||| |||||||||||||||||||||||||||||    
T  19364352 agatgcatgacaacaatggcgagaggttcataaacaaccctcaccaacgcatgtgcaacacgagcaaaatcgagtgcaaggtaacaactcagtttgggag 19364253  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatg 165  Q
    |||| ||||||||  ||||| ||||||| ||||||||    
T  19364252 aaactgagcgaga-gtggttaaagtgcattgtggatg 19364217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 29368443 - 29368365
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaa 107  Q
    ||||||||| ||||||||||||||||||||||||||||  ||| ||  |||||||| |||||  || ||||||||||||    
T  29368443 agatgcatgacagcaatggcaagaggttcataaacatcattcattatcggttgtgtaacacgagcacaatagagtgcaa 29368365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 301
Target Start/End: Complemental strand, 30802199 - 30802126
Alignment:
Q  228 caatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttact 301  Q
    ||||||||||||||| |||| |||||| | || ||||||| ||| ||||| | |||||||| ||||||||||||    
T  30802199 caatttattcgggcttaaacaaaatggcagcgggcaaatatgacagttttggtgggggaggcagtagccttact 30802126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 30 - 302
Target Start/End: Complemental strand, 42340682 - 42340411
Alignment:
Q  30 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 129  Q
    |||||||| || |||||||||||| |||||||||| || |||| || |||||||  |||||  || ||||||||  |||| |||||||||||||| ||||    
T  42340682 gatgcatgacaacaatggcaagagattcataaacagccctcaccaccggttgtgcaacacgtgcagaatagagtctaaggcaacaactcagtttgagaga 42340583  T
Q  130 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 229  Q
    ||||| ||||||| ||||||||||||||||||||||  | |||| ||| | | |||||||||||||||||||| |||||||||||||| || |  |||||    
T  42340582 aaccgtgcgagacgtggttgaagtgcaatgtggatgttg-gttctatgtcggcaaccatcttacatcttttgcgtgttgtgttagagactctcgtggaca 42340484  T
Q  230 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    |||||||||||||||||| |||||| | || ||| ||| ||| || || |||||||||| | ||||| |||||    
T  42340483 atttattcgggctcaaacaaaatggcagcgggcagatatgacagtgttggagggggaggcaatagccctactc 42340411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 29 - 301
Target Start/End: Original strand, 53496824 - 53497084
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    |||||||||||||||||| ||||||||||||||| |||  |||| |  |||||||  |||||| || || ||||||||||            ||||||||    
T  53496824 agatgcatggcagcaatgacaagaggttcataaaaatcgttcaccatcggttgtgcaacacgggcagaacagagtgcaag------------tttgggag 53496911  T
Q  129 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 228  Q
    ||||||| |||| ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||    || |    
T  53496912 aaaccgaccgagtcatggttaaagtgcaatgtggacgccgcgttccatgaccgtaaccatattacatcttttgcgtgttgtgttagagactcttgtgggc 53497011  T
Q  229 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttact 301  Q
    ||||||||||||||||||| |||||  | ||  |||||  ||| ||||| |||||||||| ||||||||||||    
T  53497012 aatttattcgggctcaaacaaaatgacagcggacaaatgtgacagtttttgagggggaggcagtagccttact 53497084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 96 - 301
Target Start/End: Original strand, 46007148 - 46007354
Alignment:
Q  96 aatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacat 195  Q
    |||| |||||| | |||||||||||||||||| ||||  |||||||| ||||||||||||||||||||||||| ||||||| |  |||||||||||| ||    
T  46007148 aataaagtgcaggataacaactcagtttgggaaaaacaaagcgagacgtggttgaagtgcaatgtggatgccgtgttccattattgtaaccatcttatat 46007247  T
Q  196 cttttgcatgttgtg-ttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtag 294  Q
    ||||||| |||| || ||||||| || |  ||| |||||||||||||||||||||||||| | || |||||||||||  ||||  ||||||||  |||||    
T  46007248 cttttgcgtgttttgtttagagactctcgtggaaaatttattcgggctcaaacgaaatggcagcgggcaaatacgacaattttttagggggagacagtag 46007347  T
Q  295 ccttact 301  Q
    |||||||    
T  46007348 ccttact 46007354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 96 - 302
Target Start/End: Original strand, 55199358 - 55199564
Alignment:
Q  96 aatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacat 195  Q
    |||| |||||||| ||||||||||||||||||||||||| | ||||  ||||||| |||||||||||||||| |||| ||||||||| |  || ||||||    
T  55199358 aataaagtgcaagctaacaactcagtttgggagaaaccgcgtgagatgtggttgacgtgcaatgtggatgccacgtttcatgaccgtcaatatattacat 55199457  T
Q  196 cttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagc 295  Q
    |||| || |||||||||||||| ||||  || ||||| ||||||||||||||||||||  | |    ||||| ||| ||||| |||||||||| ||| ||    
T  55199458 ctttcgcgtgttgtgttagagactcccgtgggcaattcattcgggctcaaacgaaatgacagctgataaatatgacagttttggagggggaggcagttgc 55199557  T
Q  296 cttactc 302  Q
    |||||||    
T  55199558 cttactc 55199564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 86 - 196
Target Start/End: Original strand, 1070850 - 1070960
Alignment:
Q  86 acacggccataatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaac 185  Q
    |||||| |||||||||| ||||||||| | |||||||| |||||||||| |||||||||||||||| |||||||||||||  || |||||||| ||||||    
T  1070850 acacggacataatagagagcaaggtaaaacctcagtttaggagaaaccgcgcgagacatggttgaactgcaatgtggatgttgccttccatgatcgtaac 1070949  T
Q  186 catcttacatc 196  Q
    |||||||||||    
T  1070950 catcttacatc 1070960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 97 - 302
Target Start/End: Original strand, 2615341 - 2615546
Alignment:
Q  97 atagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatc 196  Q
    ||||||||||| |||||   ||||||||||||||| || || |||| |||||||| |||||||||||| ||||||| ||||| | ||||||| ||||||     
T  2615341 atagagtgcaaagtaacggttcagtttgggagaaatcgtgcaagacgtggttgaaatgcaatgtggataccgcgtttcatgatcataaccatattacatt 2615440  T
Q  197 ttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagcc 296  Q
    |||||   ||||||||||||  |     || ||||| ||||||||||||||||| ||| | || ||||||| ||  ||||| |||||||||| |||||||    
T  2615441 ttttgtgcgttgtgttagaggcttttgtgggcaattcattcgggctcaaacgaattggcagcgggcaaatatgatagttttggagggggaggcagtagcc 2615540  T
Q  297 ttactc 302  Q
    ||||||    
T  2615541 ttactc 2615546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 251
Target Start/End: Original strand, 48227308 - 48227415
Alignment:
Q  144 tggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctc 243  Q
    |||||||||| ||||||||||||||| || ||| ||||||||||| ||||||||||||| |||||||||||||| || |  || |||||||||||||||     
T  48227308 tggttgaagtacaatgtggatgccgcatttcattaccgtaaccatgttacatcttttgcgtgttgtgttagagactctcgcgggcaatttattcgggctt 48227407  T
Q  244 aaacgaaa 251  Q
    ||||||||    
T  48227408 aaacgaaa 48227415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 36310903 - 36310798
Alignment:
Q  29 agatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 128  Q
    |||| ||| ||||||||||||||||||||||||||| || |||| |||| |||||  ||||||||||||||||||||||||| |||| ||||||||  ||    
T  36310903 agatacattgcagcaatggcaagaggttcataaacaaccctcacaactgattgtgcaacacggccataatagagtgcaaggtgacaattcagtttgaaag 36310804  T
Q  129 aaaccg 134  Q
    ||||||    
T  36310803 aaaccg 36310798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 162 - 302
Target Start/End: Complemental strand, 647485 - 647345
Alignment:
Q  162 gatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagaga-ttcccagggacaatttattcgggctcaaacgaaatggtaacgt 260  Q
    ||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||| ||| |  || |||||| | |||||||||||||||||| | ||     
T  647485 gatgccgcgttccatgagcgtaaccatattacatcttttgcgtgttgtgttagagacttctctagg-caatttttccgggctcaaacgaaatggcagcgg 647387  T
Q  261 gcaaatacgactgttttagagggggaggtagtagccttactc 302  Q
    || |||| ||| ||| | |||||||||| || ||||||||||    
T  647386 gctaatatgacagttatggagggggaggcagcagccttactc 647345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 169 - 301
Target Start/End: Complemental strand, 27941261 - 27941129
Alignment:
Q  169 cgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatac 268  Q
    |||| ||||| ||||||||| ||| || |||||| |||||| |||||||||| |  ||||||||||||||| ||||||| |||||| | ||  ||||||     
T  27941261 cgtttcatgatcgtaaccatattatattttttgcgtgttgtattagagattctcgaggacaatttattcggactcaaacaaaatggcagcggacaaatat 27941162  T
Q  269 gactgttttagagggggaggtagtagccttact 301  Q
    ||  ||||| |||||||||| ||||||||||||    
T  27941161 gatagttttggagggggaggcagtagccttact 27941129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 86 - 302
Target Start/End: Original strand, 23 - 239
Alignment:
Q  86 acacggccataatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaac 185  Q
    |||||| || || ||| |||||| ||||||||||||||||||||||| | | ||||| |||||||||||||||||||||| || ||| ||||||||| |     
T  23 acacgggcagaacagactgcaagctaacaactcagtttgggagaaactgtgtgagacgtggttgaagtgcaatgtggatgtcgtgtttcatgaccgtcaa 122  T
Q  186 catcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagaggggg 285  Q
    ||| |   |||||| || |||||| ||||||| ||||  || ||||| ||||||||||||||||||||  |||| ||||||| ||| ||||  |||||||    
T  123 catatacnatctttcgcgtgttgttttagagactcccgtgggcaattcattcgggctcaaacgaaatgacaacgagcaaatatgacagtttgggaggggg 222  T
Q  286 aggtagtagccttactc 302  Q
    ||| ||| |||||||||    
T  223 aggcagttgccttactc 239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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