View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15629_high_20 (Length: 342)
Name: NF15629_high_20
Description: NF15629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15629_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 157 - 265
Target Start/End: Original strand, 13362076 - 13362186
Alignment:
| Q |
157 |
caaacccagatctataaacatttatattctctgctttgctggattttgtttctca--nnnnnnnnccaaagggaattggatccatgatttcaataaaaat |
254 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13362076 |
caaacccagatctataaacatttatattctctactttgctggattttgtttctcattttttttttccaaagggaattggatccatgatttcaataaaaat |
13362175 |
T |
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| Q |
255 |
gtttgagaaat |
265 |
Q |
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|||||| |||| |
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| T |
13362176 |
gtttgaaaaat |
13362186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 13362227 - 13362317
Alignment:
| Q |
252 |
aatgtttgagaaatttagagtcatgggcat--gaatggatattgaggaacaagcttcgtgttacggtgaatgttattgttgttgatgatgt |
340 |
Q |
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| T |
13362227 |
aatgtttgagaaatttggagtcatgggtatatgaatggatattgaggaacaagcttcatgttatggtgaatgttattgttgttgatgatgt |
13362317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 13361981 - 13362019
Alignment:
| Q |
61 |
agcaaagcaattccgtaagcattaaagagaacaaaaacc |
99 |
Q |
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| T |
13361981 |
agcaaagcaattccataagcattaaagagaacaaaaacc |
13362019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 265
Target Start/End: Original strand, 50056571 - 50056684
Alignment:
| Q |
157 |
caaacccagatctataaacatttat----attctctgctttgctggattttgtttctcannnnnnnn-ccaaagggaattggatccatgatttcaataaa |
251 |
Q |
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||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
50056571 |
caaacccagatctataaacatgtatgtatattctctgctttcctggattttgtttctcatctttgtttccaaagggaattggatccatgatttcaataaa |
50056670 |
T |
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| Q |
252 |
aatgtttgagaaat |
265 |
Q |
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||||||||| |||| |
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| T |
50056671 |
aatgtttgacaaat |
50056684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 50056725 - 50056805
Alignment:
| Q |
252 |
aatgtttgagaaatttagagtcatgggcatgaatggatattgaggaacaagcttcgtgttacggtgaatgttattgttgtt |
332 |
Q |
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|||||||||||||||| ||||||| || ||||||||||||||||||||| ||||| |||| ||||||||||||||||||| |
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| T |
50056725 |
aatgtttgagaaatttggagtcataggtatgaatggatattgaggaacaggcttcaagttatggtgaatgttattgttgtt |
50056805 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 50056475 - 50056513
Alignment:
| Q |
61 |
agcaaagcaattccgtaagcattaaagagaacaaaaacc |
99 |
Q |
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|||||||||||||| |||||||||||||||| ||||||| |
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|
| T |
50056475 |
agcaaagcaattccataagcattaaagagaataaaaacc |
50056513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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