View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15629_high_23 (Length: 333)
Name: NF15629_high_23
Description: NF15629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15629_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 40857111 - 40857417
Alignment:
| Q |
1 |
cgaagaccatccaaaacacagtcaaaataagagtccatactcttatcgcattctctctcggtatatatgatctcgtagcacccaatattccatcttggaa |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40857111 |
cgaagaccatccaaaacacagtcaaaatgagagtccatacacttatcgcattctctctcggtatatatgatcttgtagcacccaatattccatcttggaa |
40857210 |
T |
|
| Q |
101 |
gccatagaagtgcatgaggaaacctgttataccgccgagtacaaaccaaatcccaactctaataaatagatcgaagccatccttcattgaaggtcatcga |
200 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| || | |
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| T |
40857211 |
gccatagaagtgtacgaggaaacctgttataccgccgagtacaaaccaaatcccaactctaataaacagatcgaagccatcctgcattgaaggtcctcaa |
40857310 |
T |
|
| Q |
201 |
aaaaaggacctctaccaatcacaatatattcaaccaccctcctaatgatnnnnnnnntaaccaccggaagtttcagctagctaaatttatacgatattta |
300 |
Q |
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| T |
40857311 |
agaaaggacctctaccaatcacaatatattcaaccaccctcctaatgataaaaaaaa-aaccaccggaaatttcagctagctaaatttatatgatattta |
40857409 |
T |
|
| Q |
301 |
atattgat |
308 |
Q |
| |
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|||||||| |
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| T |
40857410 |
atattgat |
40857417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 26008650 - 26008594
Alignment:
| Q |
2 |
gaagaccatccaaaacacagtcaaaataagagtccatactcttatcgcattctctct |
58 |
Q |
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|||||||||| ||| ||| | |||||| ||||||||||| ||||||||||| ||||| |
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| T |
26008650 |
gaagaccatctaaagcactgccaaaatcagagtccatacacttatcgcattgtctct |
26008594 |
T |
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