View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15629_high_24 (Length: 331)
Name: NF15629_high_24
Description: NF15629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15629_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 43468839 - 43469139
Alignment:
| Q |
20 |
acatcatcaagtgttatactattaaaaaatcaagacccatttaaaataatgtttagtcttgtaagattgactcatttcgataaccaccattct------- |
112 |
Q |
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| T |
43468839 |
acattatcaagtgttatacaattaaaaaatcaagacccatttaaaataatgtttagtcttgtaagattgactcatttcgataaccaccattgaattatat |
43468938 |
T |
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| Q |
113 |
---------taaacagaacttatgatggttttaaaaaacttaagaaatcattgtctcaaaaaacataataaatcgatcaaattagttgcctggaacctca |
203 |
Q |
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| T |
43468939 |
aaatgaatataaacagaacttatgatggttttaaaaaacttaagaaatcattgtctcaaaaaacataataaatcgatcaaattagttgcctggaacctca |
43469038 |
T |
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| Q |
204 |
attactccaaaatcaagataatcatacgtcaaatttgaatttggaaacaatggccgtgtttcgtattgcggcagcttagatggaaatgaagtattcttct |
303 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43469039 |
attattccaaaatcaaaataatcatacgtcaaatttgaatttggaaataatggctatgtttcgtattgcggcagcttagatggaaatgaagtattcttct |
43469138 |
T |
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| Q |
304 |
a |
304 |
Q |
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| T |
43469139 |
a |
43469139 |
T |
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