View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15629_high_28 (Length: 318)
Name: NF15629_high_28
Description: NF15629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15629_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 5957980 - 5957666
Alignment:
| Q |
1 |
atcaaacttcaccttcatataactacacccagtccgaaaccccgaatcaaacttcacccctctagtctgcaccttctccttattcatccccaaaacaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5957980 |
atcaaacttcaccttcatataactacacccagtccgaaaccccgaatcaaacttcacccctctagtctgcaccttctccttattcatccccaaaacaatc |
5957881 |
T |
|
| Q |
101 |
tcctccccaaactcatcctccccaactttccccaacaaagccgcccgtccgccaagcctgacatgggccaccgccacattcgacggtggcccaccaggtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5957880 |
tcctccccaaactcatcctccccaactttccccaacaaagccgcccgtccgccaagcctgacatgggccaccgccacattcgacggcggcccaccaggtg |
5957781 |
T |
|
| Q |
201 |
ctcgcgcaaactccggcggcttccattgtaacatcttccattcggtgtatatatctgggtccattggaaactcgtgcacacgcaccgtaggtagaaactc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5957780 |
ctcgcgcaaactccggcggcttccattgtaacatcttccattctgtgtatatatctgggtccattggaaactcctgcacacgcaccgtaggtagaaactc |
5957681 |
T |
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| Q |
301 |
cctctgtgctcctcc |
315 |
Q |
| |
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|||||||||| |||| |
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| T |
5957680 |
cctctgtgctgctcc |
5957666 |
T |
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