View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15629_high_29 (Length: 314)

Name: NF15629_high_29
Description: NF15629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15629_high_29
NF15629_high_29
[»] chr7 (1 HSPs)
chr7 (104-307)||(10085016-10085218)
[»] chr1 (2 HSPs)
chr1 (194-307)||(36859878-36859990)
chr1 (123-194)||(36859731-36859802)
[»] chr8 (1 HSPs)
chr8 (26-93)||(4764264-4764327)


Alignment Details
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 104 - 307
Target Start/End: Original strand, 10085016 - 10085218
Alignment:
Q  104 gacatagaatggcgaaaacgtcaatttgagtttgagaatcttagtaaatgattcaacaaaatcaacatggaagtttccaaactcaagcgaggtggtgaag 203  Q
    |||| |||||||||||||| ||||||||||||  |||||||| |||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10085016 gacaaagaatggcgaaaacatcaatttgagttgaagaatcttcgtaaagaattcaacaaaatcaacacggaagtttccaaactcaagcgaggtggtgaag 10085115  T
Q  204 atgcatccgagtttatttctaaatctaaagagattaagnnnnnnntcgttgagaaagagggttgaggctcaagaaaccctaaacctcttgagttctaaat 303  Q
    ||||  |||||||||||||||||||||||||||||||        ||| ||  ||||| |||||||||||| |||||| |||||||||||| |||||| |    
T  10085116 atgctgccgagtttatttctaaatctaaagagattaaaaaaaaagtcgctgttaaaga-ggttgaggctcaggaaaccgtaaacctcttgaattctaagt 10085214  T
Q  304 tgga 307  Q
    ||||    
T  10085215 tgga 10085218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 194 - 307
Target Start/End: Original strand, 36859878 - 36859990
Alignment:
Q  194 ggtggtgaagatgcatccgagtttatttctaaatctaaagagattaagnnnnnnntcgttgagaaagagggttgaggctcaagaaaccctaaacctcttg 293  Q
    ||||||||||||||| ||||||||||| |||||||| |||||||||||       | | ||| ||||||| |||||||||| ||||||||||||||||||    
T  36859878 ggtggtgaagatgcaaccgagtttattgctaaatctgaagagattaagaaaaagatagctgaaaaagagg-ttgaggctcaggaaaccctaaacctcttg 36859976  T
Q  294 agttctaaattgga 307  Q
    | ||||||||||||    
T  36859977 aattctaaattgga 36859990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 194
Target Start/End: Original strand, 36859731 - 36859802
Alignment:
Q  123 gtcaatttgagtttgagaatcttagtaaatgattcaacaaaatcaacatggaagtttccaaactcaagcgag 194  Q
    ||||||| ||||||||||||||  |||||  | ||||||||||||| | |||||||||||||||||||||||    
T  36859731 gtcaattcgagtttgagaatctccgtaaagaagtcaacaaaatcaataaggaagtttccaaactcaagcgag 36859802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 4764264 - 4764327
Alignment:
Q  26 atcaacctgcacctggcaaaacagttgcaagggacttaagcaagcaaaaacttaagtccaactactga 93  Q
    |||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||| ||||    
T  4764264 atcaacctgcacctggcaaaacagttgcaagggactt----aagcaaaaacttaagtccaacttctga 4764327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University