View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15629_high_3 (Length: 488)
Name: NF15629_high_3
Description: NF15629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15629_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 32 - 374
Target Start/End: Original strand, 53679263 - 53679605
Alignment:
| Q |
32 |
gaaccaaactgttattaaactaaactggtttataaatgttcagactgaaccatatgaaaaggtctggttactaactgaactgttttaacaagaagtgaaa |
131 |
Q |
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| T |
53679263 |
gaaccaaactgttattgaactaaactggtttataaatgttcagactgaaccatatgaaaaggtctggttactaactgaactgttttaacaagaactgaaa |
53679362 |
T |
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| Q |
132 |
ttgaaccagaatataactagcttaaaaacagaactgaaacatgacatatttaaaacgttaaacgtggtgaacaaaattgaaactttttaccaatctttca |
231 |
Q |
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| T |
53679363 |
ttgaaccagaatataactagcttaaaaacaaaactgaaacataacatatttaaaacgttaaacatggtgaacaaaattgaaattttttaccaatctttca |
53679462 |
T |
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| Q |
232 |
atcaaacaattcaagaatcatgaagggagttgattaagcatgtaaaatcaattcaattaggttctatttctgatctaaatggatggattttcaagaaaat |
331 |
Q |
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| T |
53679463 |
atcaaacaattcaagaatcatgaagggagttgattaagcatgtaaaatcaattcaattaggttctatttctgatctaaatggatggattttcaagaaaat |
53679562 |
T |
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| Q |
332 |
caaacgaaggtaagaaaggtgattcaatgttgattaagcaggt |
374 |
Q |
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| T |
53679563 |
caaacgaaagtaagaaaggtgattcggtgttgattaagcaggt |
53679605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 2045066 - 2045022
Alignment:
| Q |
75 |
actgaaccatatgaaaaggtctggttactaactgaactgttttaa |
119 |
Q |
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| T |
2045066 |
actgaaccatatgaaaaggattggttattagctgaactgttttaa |
2045022 |
T |
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