View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15629_high_31 (Length: 314)
Name: NF15629_high_31
Description: NF15629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15629_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 54 - 305
Target Start/End: Complemental strand, 3895519 - 3895268
Alignment:
| Q |
54 |
ctttccaacaacagtctccttgatcttttgtgttgcatccttcgctgtctcccacgctccttgggccgtcttcttcgccatttccccagcactcttcaaa |
153 |
Q |
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| T |
3895519 |
ctttccaacaacagtctccttgatcttttgtgttgcatccttcgctgtctcccacgctccttgggccgtcttcttcgccatttccccagcactcttcaaa |
3895420 |
T |
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| Q |
154 |
gcctctgtcgccgacccagcaacctcccccgtcttctctgccgttttctcagctccttcttttgtcttatcagccatgtaactcgctccttccttggttc |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3895419 |
gcctctgtcgccgacccagcaacctcccccgtcttctccgccgttttctcagctccttcttttgtcttatcagccatgtaactcgctccttccttggttc |
3895320 |
T |
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| Q |
254 |
tttcctttgcatcataagcataatctctagctttctccccagcactctctgc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3895319 |
tttcctttgcatcataagcataatctctagctttctccccagcactctctgc |
3895268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 302
Target Start/End: Complemental strand, 3895197 - 3895139
Alignment:
| Q |
244 |
tccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctc |
302 |
Q |
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| T |
3895197 |
tcctttgttctctcctttgcatcataagcataatctctagccttctctccagcattctc |
3895139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 305
Target Start/End: Complemental strand, 3895079 - 3895016
Alignment:
| Q |
242 |
cttccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctctgc |
305 |
Q |
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| T |
3895079 |
cttcattggttctgtcttttacctcataagcatagtctctagctttctctccagcattctctgc |
3895016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 3895569 - 3895538
Alignment:
| Q |
1 |
tctactactacaccagaaccaccactaccacg |
32 |
Q |
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| T |
3895569 |
tctactactacaccagaaccaccactaccacg |
3895538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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