View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15629_high_35 (Length: 306)

Name: NF15629_high_35
Description: NF15629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15629_high_35
NF15629_high_35
[»] chr2 (1 HSPs)
chr2 (21-306)||(39332983-39333256)


Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 21 - 306
Target Start/End: Complemental strand, 39333256 - 39332983
Alignment:
Q  21 acatcatcatcaacagcaaaagcactactctctctgcctctgcctctgcctctggatctcaccaaactcactatcatcatcatatctgacacacacttca 120  Q
    ||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||    
T  39333256 acatcatcatcaacagcaaaagcactactctctctgcctctg------------gatctcaccaaactcactatcatcatcatatctgacacacacttca 39333169  T
Q  121 ctttccaaatacactccaaccccagcatgacaaattaacaaccaccctttttcttttcatcattcaattttatttaatttgttccaaacacacaaacaaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39333168 ctttccaaatacactccaaccccagcatgacaaattaacaaccaccctttttcttttcatcattcaattttatttaatttgttccaaacacacaaacaaa 39333069  T
Q  221 acaaccttctttcttacaacgttgtctttctttgtgtcttgtctccaaaaccatattctgagggaactgtgttgtttttcaatgga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39333068 acaaccttctttcttacaacgttgtctttctttgtgtcttgtctccaaaaccatattctgagggaactgtgttgtttttcaatgga 39332983  T

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