View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15629_high_36 (Length: 304)
Name: NF15629_high_36
Description: NF15629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15629_high_36 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 80 - 183
Target Start/End: Original strand, 31788511 - 31788613
Alignment:
| Q |
80 |
tgggtttccatattcatcaaccctacgtgtttgatcgccataaccttgttgatattgagacattgttataatttcttcttcacaaacaaaaaataacgcg |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
31788511 |
tgggtttccatattcatcaaccctacgtgtttgatcaccataaccttgttgatattgagacattgttataa-ttcttcttcacaaacaaaaaataacgtg |
31788609 |
T |
|
| Q |
180 |
aagt |
183 |
Q |
| |
|
|||| |
|
|
| T |
31788610 |
aagt |
31788613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 31788431 - 31788381
Alignment:
| Q |
17 |
atggacatcatcaacaacatcatggagttggagttgatcaaaccacaggtt |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31788431 |
atggacatcatcaacaacatcatggagttggagttgatcaaaccacaggtt |
31788381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University