View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1562_low_12 (Length: 250)
Name: NF1562_low_12
Description: NF1562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1562_low_12 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 6035617 - 6035383
Alignment:
| Q |
17 |
gtacccaaaacctaactaatatttctgttttgttttaagggatcatcacatgcccaacttaattgttttgcatgaaaatggaaaacatagaattcatggg |
116 |
Q |
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| T |
6035617 |
gtacccaaaacctaactactatttctgttttgttttaagggatcatcacatgcccaacttaattgttttgcatgaaaatggaaaacatagaattcatggg |
6035518 |
T |
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| Q |
117 |
agaaagatgtttggttgcatgctccacaagaaaatgcacttcctgtaaaattannnnnnnnccctattttatttgttcgtcgtttgattattttgtaatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6035517 |
agaaagatgtttggttgcatgctccacaagaaaatgtacttcctgtcaaattattttttttccctattttatttgttcgtcgtttgattattttgtaatt |
6035418 |
T |
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| Q |
217 |
atg-atataatggaaatatattagtgatgatggac |
250 |
Q |
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||| ||||||||||||||||||||||||||||||| |
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| T |
6035417 |
atgaatataatggaaatatattagtgatgatggac |
6035383 |
T |
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