View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1562_low_13 (Length: 246)
Name: NF1562_low_13
Description: NF1562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1562_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 40994367 - 40994128
Alignment:
| Q |
1 |
tttctaattgatgtttttattgaaacattgttataaaaaagattgttccatccggagatgaatcggagcggatgcaaagtgctttgaatgtaaaacattt |
100 |
Q |
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| T |
40994367 |
tttctaattgatgtttttattgaaacattgttataaaaaagattgttccatccggagatgaatcggagcggatgcaaagtgctttgaatgtaaaacattt |
40994268 |
T |
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| Q |
101 |
gattctaaagactcaaatgcatccatatgagctttgtggaattgaattcttgctcaacagttgcccattgcttcaaaaactcacactggacataagtcca |
200 |
Q |
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| T |
40994267 |
gattctaaagactcaaatgcatccatatgagctttgtggaattgaattcttgctcaacagttgcccattgcttgaaaaacttacattggacataagtcca |
40994168 |
T |
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| Q |
201 |
caagttatatgtgaggtgagtaaaatactttacagttcat |
240 |
Q |
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| T |
40994167 |
caagttatatttgaggtgagtaaaatactttacatttcat |
40994128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 83 - 228
Target Start/End: Complemental strand, 40986521 - 40986376
Alignment:
| Q |
83 |
tttgaatgtaaaacatttgattctaaagactcaaatgcatccatatgagctttgtggaattgaattcttgctcaacagttgcccattgcttcaaaaactc |
182 |
Q |
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| T |
40986521 |
tttgaatgtaagacatttgattctaaaaacacaaatgcataaatatgagctttgtggatttgaattcttgcttaacagttgcccgttgctagaaaaactc |
40986422 |
T |
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| Q |
183 |
acactggacataagtccacaagttatatgtgaggtgagtaaaatac |
228 |
Q |
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| T |
40986421 |
acattggacataagtcaacaagttatatttaaggtgagtcaaatac |
40986376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 40989789 - 40989752
Alignment:
| Q |
190 |
acataagtccacaagttatatgtgaggtgagtaaaata |
227 |
Q |
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| T |
40989789 |
acataagtccacaagttatatttgaggtgagtcaaata |
40989752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 45 - 234
Target Start/End: Original strand, 21180616 - 21180805
Alignment:
| Q |
45 |
gttccatccggagatgaatcggagcggatgcaaagtgctttgaatgtaaaacatttgattctaaagactcaaatgcatccatatgagctttgtggaattg |
144 |
Q |
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| T |
21180616 |
gttccatctggagatgaaccggtgaagatgcaaagtgctttgaatgtaaaacatttgactctaaagactaaaatgcattcatatgagctttgtggatttg |
21180715 |
T |
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| Q |
145 |
aattcttgctcaacagttgcccattgcttcaaaaactcacactggacataagtccacaagttatatgtgaggtgagtaaaatactttaca |
234 |
Q |
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| T |
21180716 |
aattcatgctcaacagttgcccattgcttgaaaaactcatattggacataagtccacaacttatatttgaggtcagtcaaatactttaca |
21180805 |
T |
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