View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1562_low_2 (Length: 284)

Name: NF1562_low_2
Description: NF1562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1562_low_2
NF1562_low_2
[»] chr3 (22 HSPs)
chr3 (16-284)||(22368261-22368529)
chr3 (16-284)||(22358351-22358619)
chr3 (21-284)||(22468297-22468560)
chr3 (16-281)||(22632217-22632482)
chr3 (16-284)||(22635852-22636120)
chr3 (50-284)||(22630788-22631022)
chr3 (16-275)||(22431510-22431768)
chr3 (16-283)||(22443089-22443356)
chr3 (204-283)||(22354163-22354242)
chr3 (37-271)||(22436996-22437230)
chr3 (16-73)||(22631029-22631086)
chr3 (172-273)||(22648518-22648619)
chr3 (182-271)||(22615621-22615710)
chr3 (100-272)||(22458850-22459022)
chr3 (100-272)||(22481831-22482003)
chr3 (225-283)||(2769162-2769220)
chr3 (225-283)||(2818650-2818708)
chr3 (171-273)||(21945628-21945730)
chr3 (222-259)||(2797451-2797488)
chr3 (120-273)||(22027953-22028106)
chr3 (225-273)||(22621274-22621322)
chr3 (225-273)||(22657426-22657474)
[»] chr4 (1 HSPs)
chr4 (101-218)||(29610972-29611088)
[»] chr1 (2 HSPs)
chr1 (170-271)||(34975385-34975486)
chr1 (170-271)||(34989220-34989321)
[»] chr8 (1 HSPs)
chr8 (225-273)||(27294606-27294654)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 22368529 - 22368261
Alignment:
Q  16 aaaaggatcatggcttcgacatccaatcttcattggataaagcatcaagtagttctgcaacaaacagaaatgcctcatcatttcagaaccttcgagatgc 115  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22368529 aaaaggatcatgacttcgacatccaatcttctttggataaagcatcaagtagttctgcaacaaacagaaatgcctcattatttcagaaccttcgagatgc 22368430  T
Q  116 tccactttacatggatgatgctgatgctgtaggatttgatgagtcaagagacaaattgattgatttgttggtagagggaagagcacagcgcacagttgtc 215  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22368429 tccactttacatggatgatgctgatgcggtaggatttgatgtgtcaagagacaaattgattgatttgttggtagagggaagagcacaccgcacagttgtc 22368330  T
Q  216 tccattgttggaatgggaggactgggaaaaaccactcttgccaaaaaagtttttgacaaccaaaaggtc 284  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  22368329 tccattgttggaatgggaggactgggaaaaaccactctagccaagaaagtttttgacaaccaaaaggtc 22368261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 22358619 - 22358351
Alignment:
Q  16 aaaaggatcatggcttcgacatccaatcttcattggataaagcatcaagtagttctgcaacaaacagaaatgcctcatcatttcagaaccttcgagatgc 115  Q
    |||| |||||||||||| | ||||||||||| | |||||||||||||| ||||| ||||||||||||||| ||||||| |||||||||||||||||| ||    
T  22358619 aaaaagatcatggcttctatatccaatcttcttcggataaagcatcaactagttatgcaacaaacagaaacgcctcattatttcagaaccttcgagacgc 22358520  T
Q  116 tccactttacatggatgatgctgatgctgtaggatttgatgagtcaagagacaaattgattgatttgttggtagagggaagagcacagcgcacagttgtc 215  Q
    |||||||||||||| ||| ||||||| ||||||||||||| || |||||||||||||||||||||| |||||||  ||||||||| | || ||| |||||    
T  22358519 tccactttacatggttgaagctgatgttgtaggatttgataagacaagagacaaattgattgattttttggtagcaggaagagcagaccggacaattgtc 22358420  T
Q  216 tccattgttggaatgggaggactgggaaaaaccactcttgccaaaaaagtttttgacaaccaaaaggtc 284  Q
    |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||| |||||||    
T  22358419 tccattgttggaatgggaggactgggaaaaaccactctagcgaagaaagtttttgacaacccaaaggtc 22358351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 21 - 284
Target Start/End: Complemental strand, 22468560 - 22468297
Alignment:
Q  21 gatcatggcttcgacatccaatcttcattggataaagcatcaagtagttctgcaacaaacagaaatgcctcatcatttcagaaccttcgagatgctccac 120  Q
    |||||||||||| ||||||||||||| |  |||||| ||||||| |||||||||||||||||||| |||||||  || |||||||||||||| ||||||     
T  22468560 gatcatggcttcaacatccaatcttcttcagataaaccatcaagcagttctgcaacaaacagaaacgcctcatttttgcagaaccttcgagacgctccat 22468461  T
Q  121 tttacatggatgatgctgatgctgtaggatttgatgagtcaagagacaaattgattgatttgttggtagagggaagagcacagcgcacagttgtctccat 220  Q
    |||| |||||||| ||||||  ||| |||||||| ||| || |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  22468460 tttatatggatgaagctgatcttgtgggatttgaagagccacgagacaaattgattgatttgttggtagagggaagagcagagcgcaccgttgtctccat 22468361  T
Q  221 tgttggaatgggaggactgggaaaaaccactcttgccaaaaaagtttttgacaaccaaaaggtc 284  Q
     |||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||    
T  22468360 agttggaatgggaggactgggaaaaaccactatagccaagaaagtttttgacaaccaaaaggtc 22468297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 22632482 - 22632217
Alignment:
Q  16 aaaaggatcatggcttcgacatccaatcttcattggataaagcatcaagtagttctgcaacaaacagaaatgcctcatcatttcagaaccttcgagatgc 115  Q
    |||| |||||||||||| ||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||    
T  22632482 aaaaagatcatggcttccacatccaatcttcttcggataaaccatcaagtagttctgcaacaaacagaaatgcctcattattgcagaaccttcgagacgc 22632383  T
Q  116 tccactttacatggatgatgctgatgctgtaggatttgatgagtcaagagacaaattgattgatttgttggtagagggaagagcacagcgcacagttgtc 215  Q
    |||| |||| |||||||| ||||||| ||| |||||||| ||| ||| ||| ||| | ||| ||| | ||||||||||||||||| | ||||||||||||    
T  22632382 tccattttatatggatgaagctgatgttgtgggatttgaagagccaatagagaaactaattaattggctggtagagggaagagcagatcgcacagttgtc 22632283  T
Q  216 tccattgttggaatgggaggactgggaaaaaccactcttgccaaaaaagtttttgacaaccaaaag 281  Q
    |||||| ||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| ||||    
T  22632282 tccattattggaatgggaggactggggaaaaccactctagccaagaaagtttttgacaaccgaaag 22632217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 22636120 - 22635852
Alignment:
Q  16 aaaaggatcatggcttcgacatccaatcttcattggataaagcatcaagtagttctgcaacaaacagaaatgcctcatcatttcagaaccttcgagatgc 115  Q
    |||| |||||||||||| | ||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||  |||||||||||||||||| ||    
T  22636120 aaaaagatcatggcttctatatccaatcttcatcggataaagcatcaactagttctgcaacaaacagaaacgcctcactatttcagaaccttcgagacgc 22636021  T
Q  116 tccactttacatggatgatgctgatgctgtaggatttgatgagtcaagagacaaattgattgatttgttggtagagggaagagcacagcgcacagttgtc 215  Q
    |||||||||||||| ||| ||||||| ||||||||||||| || |||||||| ||||||||||| | ||||||| |||||||||| | || ||| |||||    
T  22636020 tccactttacatggttgaagctgatgttgtaggatttgataagccaagagacgaattgattgatcttttggtagcgggaagagcagaccggacaattgtc 22635921  T
Q  216 tccattgttggaatgggaggactgggaaaaaccactcttgccaaaaaagtttttgacaaccaaaaggtc 284  Q
    |||||  |||||||||||||||  |||||||||||||| || || |||||||||||||||| |||||||    
T  22635920 tccatctttggaatgggaggacaaggaaaaaccactctagcgaagaaagtttttgacaacccaaaggtc 22635852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 50 - 284
Target Start/End: Complemental strand, 22631022 - 22630788
Alignment:
Q  50 ggataaagcatcaagtagttctgcaacaaacagaaatgcctcatcatttcagaaccttcgagatgctccactttacatggatgatgctgatgctgtagga 149  Q
    ||||||| ||||||||||||||||||||||||||||  |||||| ||| ||||||||||||||||||||| | ||  ||||||| ||||||| ||| ||     
T  22631022 ggataaaccatcaagtagttctgcaacaaacagaaacacctcattattccagaaccttcgagatgctccattgtatttggatgaagctgatgttgtgggc 22630923  T
Q  150 tttgatgagtcaagagacaaattgattgatttgttggtagagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaacca 249  Q
    ||||| ||| || |||||||||||||||||| | || |||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||||    
T  22630922 tttgacgagccacgagacaaattgattgattggctgatagagggaagagcagaacgcacagttgtctctattgttggaatgggaggactggggaaaacca 22630823  T
Q  250 ctcttgccaaaaaagtttttgacaaccaaaaggtc 284  Q
    |||||||||| ||| |||||||||||| |||||||    
T  22630822 ctcttgccaagaaaatttttgacaaccgaaaggtc 22630788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 22431768 - 22431510
Alignment:
Q  16 aaaaggatcatggcttcgacatccaatcttcattggataaagcatcaagtagttctgcaacaaacagaaatgcctcatcatttcagaaccttcgagatgc 115  Q
    |||| |||||||||||| | ||||||||||| | |||||||||||||| ||||||||||||||||||||| ||||||| |||  |||| ||||| || ||    
T  22431768 aaaaagatcatggcttccatatccaatcttcttcggataaagcatcaactagttctgcaacaaacagaaacgcctcattattgaagaatcttcgggacgc 22431669  T
Q  116 tccactttacatggatgatgctgatgctgtaggatttgatgagtcaagagacaaattgattgatttgttggtagagggaagagcacagcgcacagttgtc 215  Q
    |||| |||| |||||||| ||||||| ||| |||||||| ||| ||||||||| ||||||||||| | ||||| | |||| || | ||| |||||| |||    
T  22431668 tccattttatatggatgaagctgatgttgtgggatttgaagagccaagagacatattgattgattggctggtaaatggaaaagaagagctcacagtggtc 22431569  T
Q  216 tccattgttggaatgggaggactgggaaaaaccactcttgccaaaaaagtttttgacaac 275  Q
    ||||||| ||||||||||||||||||||||||||||||  |||| |||||||||||||||    
T  22431568 tccattg-tggaatgggaggactgggaaaaaccactctaaccaagaaagtttttgacaac 22431510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 22443356 - 22443089
Alignment:
Q  16 aaaaggatcatggcttcgacatccaatcttcattggataaagcatcaagtagttctgcaacaaacagaaatgcctcatcatttcagaaccttcgagatgc 115  Q
    |||| |||||||||||| | |||| |||||| |  |||||  |||||||||||||| ||||||    ||| ||||||| ||| || ||||||| ||| ||    
T  22443356 aaaaagatcatggcttccaaatccgatcttcttccgataagccatcaagtagttctccaacaagtgaaaacgcctcattattgcacaaccttcaagacgc 22443257  T
Q  116 tccactttacatggatgatgctgatgctgtaggatttgatgagtcaagagacaaattgattgatttgttggtagagggaagagcacagcgcacagttgtc 215  Q
    | |  |||| |||||||| ||||||  ||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||    
T  22443256 ttccatttatatggatgaagctgatattgttggctttgaagagccaagagacaaattgattgatttgttggtagagggaagagaagaccgcacagttgtc 22443157  T
Q  216 tccattgttggaatgggaggactgggaaaaaccactcttgccaaaaaagtttttgacaaccaaaaggt 283  Q
    ||||||||||||||||||||| |||||||||||||||| |||| | || |||||||||||||||||||    
T  22443156 tccattgttggaatgggaggattgggaaaaaccactctagccagacaaatttttgacaaccaaaaggt 22443089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 204 - 283
Target Start/End: Complemental strand, 22354242 - 22354163
Alignment:
Q  204 cgcacagttgtctccattgttggaatgggaggactgggaaaaaccactcttgccaaaaaagtttttgacaaccaaaaggt 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  22354242 cgcacagttgtctccattgttggaatgggaggactgggaaaaaccactctagccagaaaagtttttgacaaccaaaaggt 22354163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 271
Target Start/End: Complemental strand, 22437230 - 22436996
Alignment:
Q  37 tccaatcttcattggataaagcatcaagtagttctgcaacaaacagaaatgcctcatcatttcagaaccttcgagatgctccactttacatggatgatgc 136  Q
    |||||||||| | ||||||||||||||||||||||||| |||||| |||    |||| |||||||||||||||| | |||||| || | ||| |||| ||    
T  22437230 tccaatcttcttcggataaagcatcaagtagttctgcaccaaacataaacaattcattatttcagaaccttcgacaggctccatttcatatgaatgaagc 22437131  T
Q  137 tgatgctgtaggatttgatgagtcaagagacaaattgattgatttgttggtagagggaagagcacagcgcacagttgtctccattgttggaatgggagga 236  Q
    |||||  || || ||||| ||| | | |  || |||| || ||| | ||||   |||||||| | ||||  |||||||||| ||||| |||||||||||     
T  22437130 tgatgtcgtgggctttgaagagcccaaacgcatattgtttaattggctggtgaggggaagagtagagcgtgcagttgtctctattgtaggaatgggaggg 22437031  T
Q  237 ctgggaaaaaccactcttgccaaaaaagtttttga 271  Q
    |  |||||||| ||||| ||||| |||||||||||    
T  22437030 caaggaaaaactactctggccaagaaagtttttga 22436996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 22631086 - 22631029
Alignment:
Q  16 aaaaggatcatggcttcgacatccaatcttcattggataaagcatcaagtagttctgc 73  Q
    |||| |||||||||||| ||||||||||||| | ||||||| ||||||||||||||||    
T  22631086 aaaaagatcatggcttccacatccaatcttcttcggataaaccatcaagtagttctgc 22631029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 273
Target Start/End: Complemental strand, 22648619 - 22648518
Alignment:
Q  172 tgattgatttgttggtagagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaaccactcttgccaaaaaagtttttga 271  Q
    |||||| || |||||||||||||||| || ||||||| ||  ||||  | || || |||||||| || ||||||||||||||||||| |||||| |||||    
T  22648619 tgattggttggttggtagagggaagatcagagcgcactgtcatctctgtggtaggtatgggagggctaggaaaaaccactcttgccagaaaagtgtttga 22648520  T
Q  272 ca 273  Q
    ||    
T  22648519 ca 22648518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 271
Target Start/End: Complemental strand, 22615710 - 22615621
Alignment:
Q  182 gttggtagagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaaccactcttgccaaaaaagtttttga 271  Q
    ||||||| | ||||||| | ||||||| ||||||||  | || ||||||||||| | ||| ||||||||||||||||| || ||||||||    
T  22615710 gttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttga 22615621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 272
Target Start/End: Complemental strand, 22459022 - 22458850
Alignment:
Q  100 agaaccttcgagatgctccactttacatggatgatgctgatgctgtaggatttgatgagtcaagagacaaattgattgatttgttggtagagggaagagc 199  Q
    ||||||||||| | |||| | |||  || ||||| | ||||| |||||| ||||| |   ||||||||| | | ||||||| |||| ||||||  ||||     
T  22459022 agaaccttcgaaaggctcaattttgtatcgatgaagatgatgttgtaggctttgaagttccaagagacatactaattgattggttgatagaggagagaga 22458923  T
Q  200 acagcgcacagttgtctccattgttggaatgggaggactgggaaaaaccactcttgccaaaaaagtttttgac 272  Q
    |  || |||| ||||| |||||||||||| ||||||||  |||||||| |||||||| || || |||||||||    
T  22458922 agtgcacacaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcaaagaaggtttttgac 22458850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 272
Target Start/End: Complemental strand, 22482003 - 22481831
Alignment:
Q  100 agaaccttcgagatgctccactttacatggatgatgctgatgctgtaggatttgatgagtcaagagacaaattgattgatttgttggtagagggaagagc 199  Q
    ||||||||||| | |||| | |||  || ||||| | ||||| |||||| ||||| |   ||||||||| | | ||||||| |||| ||||||  ||||     
T  22482003 agaaccttcgaaaggctcaattttgtatcgatgaagatgatgttgtaggctttgaagttccaagagacatactaattgattggttgatagaggagagaga 22481904  T
Q  200 acagcgcacagttgtctccattgttggaatgggaggactgggaaaaaccactcttgccaaaaaagtttttgac 272  Q
    |  || |||| ||||| |||||||||||| ||||||||  |||||||| |||||||| || || |||||||||    
T  22481903 agtgcacacaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcaaagaaggtttttgac 22481831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 2769162 - 2769220
Alignment:
Q  225 ggaatgggaggactgggaaaaaccactcttgccaaaaaagtttttgacaaccaaaaggt 283  Q
    |||||||| || || |||||||||||||||||||||  ||||| ||||| |||||||||    
T  2769162 ggaatggggggtctaggaaaaaccactcttgccaaactagtttatgacagccaaaaggt 2769220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 2818650 - 2818708
Alignment:
Q  225 ggaatgggaggactgggaaaaaccactcttgccaaaaaagtttttgacaaccaaaaggt 283  Q
    |||||||| || || ||||||||||||||||||||   ||||||||||| |||||||||    
T  2818650 ggaatggggggtctaggaaaaaccactcttgccaagctagtttttgacagccaaaaggt 2818708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 273
Target Start/End: Original strand, 21945628 - 21945730
Alignment:
Q  171 ttgattgatttgttggtagagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaaccactcttgccaaaaaagtttttg 270  Q
    |||||||||| | ||||| ||||||| |   ||||||| || || ||| | || ||||||||||| |  |||||||||||||| ||||| ||||||||||    
T  21945628 ttgattgattggatggtaaagggaagggaggagcgcactgtagtttccgtggtaggaatgggagggcaaggaaaaaccactctagccaagaaagtttttg 21945727  T
Q  271 aca 273  Q
    |||    
T  21945728 aca 21945730  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 2797451 - 2797488
Alignment:
Q  222 gttggaatgggaggactgggaaaaaccactcttgccaa 259  Q
    |||||||||||||| || ||||||||||||||||||||    
T  2797451 gttggaatgggaggtctaggaaaaaccactcttgccaa 2797488  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 273
Target Start/End: Original strand, 22027953 - 22028106
Alignment:
Q  120 ctttacatggatgatgctgatgctgtaggatttgatgagtcaagagacaaattgattgatttgttggtagagggaagagcacagcgcacagttgtctcca 219  Q
    |||||||| || || ||||| | ||| |||||||| | | ||||| | | ||||| ||||| ||||||| ||||||| | | ||||||| || || ||      
T  22027953 ctttacatcgaggaagctgaggttgtgggatttgaagcgccaagaaaaagattgactgattggttggtacagggaagggaagagcgcactgtggtgtctg 22028052  T
Q  220 ttgttggaatgggaggactgggaaaaaccactcttgccaaaaaagtttttgaca 273  Q
    | || ||||||||||| |  |||||||| ||||| ||||| |||||||||||||    
T  22028053 tggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgaca 22028106  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 22621322 - 22621274
Alignment:
Q  225 ggaatgggaggactgggaaaaaccactcttgccaaaaaagtttttgaca 273  Q
    |||||||||||||  |||||| |||||||||||||||| ||||| ||||    
T  22621322 ggaatgggaggacaaggaaaatccactcttgccaaaaaggttttcgaca 22621274  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 22657474 - 22657426
Alignment:
Q  225 ggaatgggaggactgggaaaaaccactcttgccaaaaaagtttttgaca 273  Q
    ||||||||||| |  |||||||| |||||||| ||||||||||||||||    
T  22657474 ggaatgggagggcaaggaaaaactactcttgctaaaaaagtttttgaca 22657426  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 218
Target Start/End: Complemental strand, 29611088 - 29610972
Alignment:
Q  101 gaaccttcgagatgctccactttacatggatgatgctgatgctgtaggatttgatgagtcaagagacaaattgattgatttgttggtagagggaagagca 200  Q
    |||||||||| | |||||| ||||||||||||| ||||| | || ||| ||||| ||| ||||||| | ||| ||||||| | ||||| |||||||||||    
T  29611088 gaaccttcgaaaggctccattttacatggatgaagctgacgttgcaggctttgaagagccaagagaaatattaattgattggctggta-agggaagagca 29610990  T
Q  201 cagcgcacagttgtctcc 218  Q
     |||||||||| ||||||    
T  29610989 gagcgcacagtcgtctcc 29610972  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 271
Target Start/End: Original strand, 34975385 - 34975486
Alignment:
Q  170 attgattgatttgttggtagagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaaccactcttgccaaaaaagttttt 269  Q
    |||||||||||  |||||| ||||||||| | ||||||| ||  ||||  | ||||| |||||||| |  ||||||||||||||||| ||||| ||||||    
T  34975385 attgattgattgtttggtaaagggaagagtagagcgcactgtcatctctgtagttgggatgggagggcaaggaaaaaccactcttgctaaaaaggttttt 34975484  T
Q  270 ga 271  Q
    ||    
T  34975485 ga 34975486  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 271
Target Start/End: Original strand, 34989220 - 34989321
Alignment:
Q  170 attgattgatttgttggtagagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaaccactcttgccaaaaaagttttt 269  Q
    ||||||||||| | ||||| ||||||||| | ||||||| ||  ||||  | ||||| |||||||| |  ||||||||||||||||| ||||| ||||||    
T  34989220 attgattgattggctggtaaagggaagagtagagcgcactgtcatctctgtagttgggatgggagggcaaggaaaaaccactcttgctaaaaaggttttt 34989319  T
Q  270 ga 271  Q
    ||    
T  34989320 ga 34989321  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 27294606 - 27294654
Alignment:
Q  225 ggaatgggaggactgggaaaaaccactcttgccaaaaaagtttttgaca 273  Q
    |||||||||||||  |||||||||||||| | ||| |||||||||||||    
T  27294606 ggaatgggaggacaaggaaaaaccactctagtcaagaaagtttttgaca 27294654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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