View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1562_low_4 (Length: 315)
Name: NF1562_low_4
Description: NF1562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1562_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 87 - 246
Target Start/End: Complemental strand, 4178012 - 4177853
Alignment:
| Q |
87 |
atttatatcatgcaggagacactaccttgaatttcctcctgaagtaaactttaagaagctgttgcaatctaataagcacttattagagttgagccaaaga |
186 |
Q |
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| T |
4178012 |
atttatatcatgcaggagacactaccttgaatttcctcctaaagtaaactttaagaagctgttgcaatctaataagcacttattagagttgagccaaaga |
4177913 |
T |
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| Q |
187 |
ccttttccaagtttggattcttcattttttggtataccattaattacaccaccatctctg |
246 |
Q |
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| T |
4177912 |
ccttttccaagtttggattcttcattttttggtataccattaattacaccaccatctctg |
4177853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 95 - 246
Target Start/End: Original strand, 4078045 - 4078196
Alignment:
| Q |
95 |
catgcaggagacactaccttgaatttcctcctgaagtaaactttaagaagctgttgcaatctaataagcacttattagagttgagccaaagaccttttcc |
194 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4078045 |
catgcaggagacactatcttgaatttcctcctggagtaaactttaagaagctgttgcaatctaataagcacttattagagttgagccaaagaccttttcc |
4078144 |
T |
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| Q |
195 |
aagtttggattcttcattttttggtataccattaattacaccaccatctctg |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4078145 |
aagtttggattcttcattttttggtataccattaattacaccaccatctctg |
4078196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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