View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1562_low_5 (Length: 296)
Name: NF1562_low_5
Description: NF1562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1562_low_5 |
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| [»] scaffold1696 (1 HSPs) |
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| [»] scaffold1585 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 22099762 - 22099986
Alignment:
| Q |
21 |
gcagcaccacagaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatgatgatgaatcagatcttcctcttgacattc |
120 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22099762 |
gcaggaccacacaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatgatgatgaatcagatcttcctcttgacattc |
22099861 |
T |
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| Q |
121 |
tttctttatcagatctaattcttcttctatcttctcaattc------------agaaagaaagaagctggttggttatatggtgttctttgccgatttga |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22099862 |
tttctttatcagatctaattcttcttctatcttctcaattcagaaagaaacaaagaaagaaagaagctggttggttatatggtg---tttgccgatttga |
22099958 |
T |
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| Q |
209 |
tttgaacaagtcctagtaacagtgttgt |
236 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
22099959 |
tttgaacaagtcctagtaacagtgttgt |
22099986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 38161513 - 38161731
Alignment:
| Q |
21 |
gcagcaccacagaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatgatgatgaatcagatcttcctcttgacattc |
120 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
38161513 |
gcaggaccacacaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatga---tgatgatgaatcagatctccctcttgacattc |
38161609 |
T |
|
| Q |
121 |
tttctttatcagatctaattcttcttctatcttctcaattcagaaagaaa---------gaagctggttggttatatggtgttctttgccgatttgattt |
211 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| | |||||||| |||| |||||||||||||||| |
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| T |
38161610 |
tttctttatcagatctaattcttcttctattttctcaattcagaaacaaacaaacaaacaaagagtgctggttata---tgttgtttgccgatttgattt |
38161706 |
T |
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| Q |
212 |
gaacaagtcctagtaacagtgttgt |
236 |
Q |
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||||||||| ||||||||||||||| |
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| T |
38161707 |
gaacaagtcgtagtaacagtgttgt |
38161731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1696 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold1696
Description:
Target: scaffold1696; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 1417 - 1213
Alignment:
| Q |
26 |
accacagaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatgatgatgaatcagatcttcctcttgacattctttct |
125 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| |||||| |
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| T |
1417 |
accacacaccattaaagctgatatcattgcaaacaaaaccaaactccatcttaaccatgatgatgatga---atcagatctccctcttgacatactttct |
1321 |
T |
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| Q |
126 |
ttatcagatctaattcttcttctatcttctcaattc----agaaagaaagaagctggttggttatatggtgttctttgccgatttgatttgaacaagtcc |
221 |
Q |
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||||||||||||||||||||||||| |||||||||| | ||| |||||| || |||||||| |||| |||||||||||||||||||| |||| |
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| T |
1320 |
ttatcagatctaattcttcttctattttctcaattcataaacaaacaaagaaagaggctggttata---tgttgtttgccgatttgatttgaacgagtcg |
1224 |
T |
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| Q |
222 |
tagtaacagtg |
232 |
Q |
| |
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||||||||||| |
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| T |
1223 |
tagtaacagtg |
1213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1585 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold1585
Description:
Target: scaffold1585; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 1137 - 1345
Alignment:
| Q |
26 |
accacagaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatgatgatgaatcagatcttcctcttgacattctttct |
125 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||| |||||| |
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| T |
1137 |
accacacaccattaaagctgatatcattgcaaacaaaaccaaactccatcttaaccatga---tgatgatgaatcagatctccctcttgacatactttct |
1233 |
T |
|
| Q |
126 |
ttatcagatctaattcttcttctatcttctcaattc----agaaagaaagaagctggttggttatatggtgttctttgccgatttgatttgaacaagtcc |
221 |
Q |
| |
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|||||| |||||||||||||||||| |||||||||| | ||| |||||| || |||||||| |||| |||||||||||||||||||| ||| |
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| T |
1234 |
ttatcaaatctaattcttcttctattttctcaattcataaacaaacaaagaaagaggctggttata---tgttgtttgccgatttgatttgaacgagttg |
1330 |
T |
|
| Q |
222 |
tagtaacagtgttgt |
236 |
Q |
| |
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||||||||||||||| |
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| T |
1331 |
tagtaacagtgttgt |
1345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 27 - 173
Target Start/End: Complemental strand, 44220366 - 44220222
Alignment:
| Q |
27 |
ccacagaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatg-atgatgaatcagatcttcctcttgacattctttct |
125 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||| |||||||||||| ||||| |
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| T |
44220366 |
ccacacaccattaaagccgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatgaacgaagaatcagatctccctcttgacattttttct |
44220267 |
T |
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| Q |
126 |
ttatcagatctaattcttcttctatcttctcaattcagaaagaaagaa |
173 |
Q |
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||||||||||||| ||||||||||||||||||||| ||| |||||| |
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| T |
44220266 |
ttatcagatctaa---ttcttctatcttctcaattcacaaacaaagaa |
44220222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 26 - 173
Target Start/End: Original strand, 18296710 - 18296855
Alignment:
| Q |
26 |
accacagaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatga-tgatgaatcagatcttcctcttgacattctttc |
124 |
Q |
| |
|
|||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |||| |
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| T |
18296710 |
accacacaccattaaagccgatatcatcgcaaataaaaccaaacaccatcttaaccatgatgatgaccgaagaatcagatctccctcttgacattttttc |
18296809 |
T |
|
| Q |
125 |
tttatcagatctaattcttcttctatcttctcaattcagaaagaaagaa |
173 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| ||| |||||| |
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| T |
18296810 |
tttatcagatctaa---ttcttctatcttctcaattcacaaacaaagaa |
18296855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 18296888 - 18296927
Alignment:
| Q |
197 |
ttgccgatttgatttgaacaagtcctagtaacagtgttgt |
236 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||| |
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| T |
18296888 |
ttgccgatttgattttaacaagtcgtagtaacagtgttgt |
18296927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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