View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15630_high_1_N (Length: 488)
Name: NF15630_high_1_N
Description: NF15630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15630_high_1_N |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 7 - 488
Target Start/End: Original strand, 27576974 - 27577452
Alignment:
| Q |
7 |
gattattctagatagactaccttacatggagttgaagaatggttttgaggtatgtggtattttgtcggacttttacatgtccacgaaagaaatgttagat |
106 |
Q |
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| T |
27576974 |
gattattctagatagactaccttacatggagttgaagaatggttttgaggtatgtggtattttgtcggacttttacatgtccacgaaagaaatgttagat |
27577073 |
T |
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| Q |
107 |
ggaaattttttggttttgttcgtttatgtgatgtgagggataaaaataaattgttggtacctgggtagattatactcggcttgggcaatatcgagtttgg |
206 |
Q |
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| T |
27577074 |
ggaaattttttggttttgttcttttatgtgatgtgagggataaaaataaattgttggtagct--ttaaataatattcggcttaggcaatatcgagtttgg |
27577171 |
T |
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| Q |
207 |
actaattatgcatgctttgatcgagatcgctcacctattgagaccattaaggatggcaatgtggaggtgagggaggatggggtgaaaggggctagagtgg |
306 |
Q |
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| T |
27577172 |
actaattatgcatgctttgatcgagatcgctctcctattgagaccattaaggatggcaatgtggaggtgagggaggatggggtgaaaggggctagagtgg |
27577271 |
T |
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| Q |
307 |
agggagaagaaattgtaaggattgaacatggtgagatannnnnnnnnnnnnaaattgacagttttagtccctccatggactatttagtctaaaatatggt |
406 |
Q |
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| T |
27577272 |
agggagaagaaattgtaaggattgaacatggtgagata-ttttttttttttaaattgacagttttagtccctccatggactatttagtctaaaatatggt |
27577370 |
T |
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| Q |
407 |
ggtatatatgacatgttttaaattatgtttttaatgaaattttcttataatttattctctttattcatcttaagattatata |
488 |
Q |
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| T |
27577371 |
ggtatatatgacatgttttaaattatgtttttaatgaaattttcttataatttattctctttattcatcttaagattatata |
27577452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 440
Target Start/End: Original strand, 1602703 - 1602778
Alignment:
| Q |
361 |
ttgacagttttagtccctccatggactatttagtctaaaatatggtggtatatatgacatgttttaaattatgtttttaa |
440 |
Q |
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| T |
1602703 |
ttgacagttttggtccctccatcaaatatttggtctaaaatatggtg----atatgatatgttttcaattaagtttttaa |
1602778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 461
Target Start/End: Original strand, 48527087 - 48527130
Alignment:
| Q |
418 |
catgttttaaattatgtttttaatgaaattttcttataatttat |
461 |
Q |
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| T |
48527087 |
catgttttaaatgatgtttttaaagaaattttcttacaatttat |
48527130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 454
Target Start/End: Original strand, 45871774 - 45871860
Alignment:
| Q |
364 |
acagttttagtccctccatggactatttagtctaaaatatggtggtatatatgacatgttttaaattatgtttttaatgaaattttcttat |
454 |
Q |
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| T |
45871774 |
acagttttggtccctctatataatattttgtctaaaatatggtgatata----acatgttttaaatgaagtttttaaagtaattttcttat |
45871860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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