View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15630_high_2 (Length: 420)
Name: NF15630_high_2
Description: NF15630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15630_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 3 - 412
Target Start/End: Complemental strand, 38709477 - 38709068
Alignment:
| Q |
3 |
atatctactaaattgattcccttaaaagttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgcaagttcgatgcat |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38709477 |
atatctactaaattgattcccttaaaagttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgcaatttcgatgcat |
38709378 |
T |
|
| Q |
103 |
tcaagaactaaagtgacatagcccaagacattcacttaaaaacttagttacaactaataaagcttaatcttcgatttcatcatcaccaatgacctcatat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38709377 |
tcaagaactaaagtgacatagcccaagacattcacttaaaaacttagttacaactaataaagcttaatcttccgtttcatcatcaccaatgacctcatat |
38709278 |
T |
|
| Q |
203 |
ccattttcaccgacagtttttggtcaagttggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctctccattcttttccacag |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38709277 |
ccattttcaccgacagtttttggtcaagttggtatctgtatcaaaatatctgacttcaccccagtttcagcattaacaatctctccattcttttccacac |
38709178 |
T |
|
| Q |
303 |
gttctgctcgttcactgcccttaggaccaacatcaatgtatacagttgtgttctcatcaattttttcctttatatacatcatagccagctcactcaccac |
402 |
Q |
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| | || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38709177 |
ggtatgacaagtcacttcccttaggaccaacatcaatgtatacagttgtgttctcatcaattttttcctttatatacatcatagccagctcactcaccac |
38709078 |
T |
|
| Q |
403 |
attcatctca |
412 |
Q |
| |
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|||| ||||| |
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| T |
38709077 |
attcttctca |
38709068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 159 - 412
Target Start/End: Complemental strand, 10047358 - 10047105
Alignment:
| Q |
159 |
ataaagcttaatcttcgatttcatcatcaccaatgacctcatatccattttcaccgacagtttttggtcaagttggtatctgtatcaaaatatctgactt |
258 |
Q |
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|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||| |
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| T |
10047358 |
ataaagcttactcttccatttcatcatcgccaatgacctcatatccattttcaccgacaatttttggtccatttggtatctgaatcaaaatatctgactt |
10047259 |
T |
|
| Q |
259 |
catcccagtttcagcattaacaatctctccattcttttccacaggttctgctcgttcactgcccttaggaccaacatcaatgtatacagttgtgttctca |
358 |
Q |
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|| ||||||||||||||| |||||| ||||||||||||| ||| | | | | ||||| |||||||||||| |||||||| | |||||||| |||||| |
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| T |
10047258 |
caccccagtttcagcatttacaatccctccattcttttcgacacggtataccaaatcacttcccttaggaccagcatcaatgcaaacagttgtattctca |
10047159 |
T |
|
| Q |
359 |
tcaattttttcctttatatacatcatagccagctcactcaccacattcatctca |
412 |
Q |
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||||||| |||| ||||| |||||||| ||||| ||||||||||| ||||| |
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| T |
10047158 |
tcaatttcttcccttataagcatcatagatagctctgtcaccacattcttctca |
10047105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 10047424 - 10047360
Alignment:
| Q |
49 |
ccaaaagaactaataaaagagatacttgtg-aatatgtttgcaagttcgatgcattcaagaacta |
112 |
Q |
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|||||| |||| |||||||||||||||||| |||||||||||| |||||| |||||||| |||| |
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| T |
10047424 |
ccaaaacaactgataaaagagatacttgtgcgatatgtttgcaatttcgatacattcaaggacta |
10047360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 233 - 365
Target Start/End: Complemental strand, 45468976 - 45468844
Alignment:
| Q |
233 |
ggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctctccattcttttccacaggttctgctcgttcactgcccttaggaccaa |
332 |
Q |
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|||||||| ||||| ||||| ||||||| |||||||||||||||||||||| ||||||||||||| ||| | | ||| || || |||||||||||| |
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| T |
45468976 |
ggtatctgaatcaatatatcagacttcaccccagtttcagcattaacaatccctccattcttttctacacggtatgccaaatcgcttcccttaggaccag |
45468877 |
T |
|
| Q |
333 |
catcaatgtatacagttgtgttctcatcaattt |
365 |
Q |
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|||| ||||| || ||||| ||||||||||||| |
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| T |
45468876 |
catctatgtaaaccgttgtattctcatcaattt |
45468844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 286
Target Start/End: Original strand, 739517 - 739584
Alignment:
| Q |
219 |
tttttggtcaagttggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctct |
286 |
Q |
| |
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||||||||| | ||| |||||| ||||||||||| ||||||| ||| |||||||||||||||||||| |
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| T |
739517 |
tttttggtccatttgttatctgaatcaaaatatccgacttcaccccgatttcagcattaacaatctct |
739584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 25078763 - 25078815
Alignment:
| Q |
57 |
actaataaaagagatacttgtgaatatgtttgcaagttcgatgcattcaagaa |
109 |
Q |
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| T |
25078763 |
actaataaaagagacactcgtggatgtgtttgcaatttcgatacattcaagaa |
25078815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 535818 - 535745
Alignment:
| Q |
31 |
ttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgcaagttcgatgcattc |
104 |
Q |
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|||||||| |||||||| ||||| ||||||||| ||| |||||||||||||||||||| |||||| ||||| |
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| T |
535818 |
ttaaaacaaatttgaggaccaaagtgactaataaattagacacttgtgaatatgtttgcaatttcgatacattc |
535745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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