View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15630_high_3 (Length: 364)
Name: NF15630_high_3
Description: NF15630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15630_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 2 - 349
Target Start/End: Original strand, 32707567 - 32707928
Alignment:
| Q |
2 |
caccctgcaaagtaaattaaatatgagaaaccaaagctaactaaaactaatagtaaaataaacaaaagagccacatatggaggggtgcaccta------- |
94 |
Q |
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| T |
32707567 |
caccctgcaaaggaaattaaatatgagaaaccaaagctaactaaaactaatagtaaaataaacaaaagagccacatatggaggggtgcacctaaacctta |
32707666 |
T |
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| Q |
95 |
-------aactcataactctattgttttaataattaagacaataagcacttgaatgatgttggttcaatataaactccatatttatttttcgttgtttta |
187 |
Q |
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| T |
32707667 |
aatcctaaactcataactctattgtttcaataattaagacaataatcacttgaatgatgttggttcaatataaactacatatttatttttcgttgtttta |
32707766 |
T |
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| Q |
188 |
accaaattgatatcaattaagttattattccagtcgcgatcactttctaattttagcaaaataaaattttaaacattgcatgattagtactctaggtaca |
287 |
Q |
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| T |
32707767 |
accaaattgatatcaattaagatattattccagtcacgatcactttctaattttagcaaaataaaattttaaacattgcatgattagtactctaggtaca |
32707866 |
T |
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| Q |
288 |
tagaaagtgaaggatgattagttagcacaaaactatagtaaacacgtaacaaaattcacgat |
349 |
Q |
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| T |
32707867 |
tagaaagtgaaggatgattagttagcacaaaactatagtaaacacgtaacaaaattcacgat |
32707928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 29726250 - 29726183
Alignment:
| Q |
142 |
tgatgttggttcaatataaactccatatttatttttcgttgttttaaccaaattgatatcaattaagt |
209 |
Q |
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| T |
29726250 |
tgatgtcggttcaatacaaactacatatttattttctgttgttttaatcaaactgctatcaattaagt |
29726183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 33060649 - 33060597
Alignment:
| Q |
165 |
catatttatttttcgttgttttaaccaaattgatatcaattaagttattattc |
217 |
Q |
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| T |
33060649 |
catatttatcttttgtcgttttgatcaaattgatatcaattaagttattattc |
33060597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 7779848 - 7779921
Alignment:
| Q |
143 |
gatgttggttcaatataaactccatatttatttttcgttgttttaaccaaattgatatcaattaagttattatt |
216 |
Q |
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| T |
7779848 |
gatgttggtttaatacgagctacatatttattttccatagttttaatcaaattgatatcagttaagtcattatt |
7779921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 14063598 - 14063638
Alignment:
| Q |
166 |
atatttatttttcgttgttttaaccaaattgatatcaatta |
206 |
Q |
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| T |
14063598 |
atatttatttttcgttgttttaatcaaacttatatcaatta |
14063638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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