View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15630_high_5 (Length: 336)
Name: NF15630_high_5
Description: NF15630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15630_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 5742279 - 5742056
Alignment:
| Q |
1 |
aagatacacgtattcgttttacattgatgnnnnnnntgaaagaggttcattttgagagtatgtta---------tgttatacaccaaattcattgtaact |
91 |
Q |
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| T |
5742279 |
aagatacacgtattcgttttacattgatgaaaaaaatgaaagaggttcatttcgagagtatgttaataatgttatgttatacaccaaattcactgtaact |
5742180 |
T |
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| Q |
92 |
ttttaaaatgtaaagacctgattaatagtaagaggttaaatatatggacaaccttggatgttaaatagaatcaacgatattcttgaaatatttataattc |
191 |
Q |
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| T |
5742179 |
ttttaaaatgtaaagacctgattaatagtaagaggttaaatatatggacaaccttggatgttaaatagaatcaacgatattcttgaaatatttataattc |
5742080 |
T |
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| Q |
192 |
tgaagcatacaacaaaatcagaga |
215 |
Q |
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| T |
5742079 |
taaagcatacaacaaaatcagaga |
5742056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 230 - 324
Target Start/End: Complemental strand, 5742000 - 5741906
Alignment:
| Q |
230 |
aaatgcaactgcaagcatctttagtagtataaggtnnnnnnngcatattgtactcaaaacaaagcatgttgtgtcttgactatttctttggttct |
324 |
Q |
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| T |
5742000 |
aaatgcaactgcaagcatctttagtagtgtaaggtaaaaaaagcatattgtactcaaaacaaagcatgttgtgtcttgactatttctttggttct |
5741906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 28410737 - 28410803
Alignment:
| Q |
74 |
accaaattcattgtaactttttaaaatgtaaagacctgattaatagtaagaggttaaatatatggac |
140 |
Q |
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| T |
28410737 |
accaaattgatagtaacttgttaaaatatagagacctgattgatagttagtggttaaatatagggac |
28410803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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