View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15630_high_7 (Length: 311)
Name: NF15630_high_7
Description: NF15630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15630_high_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 10 - 311
Target Start/End: Original strand, 27779995 - 27780294
Alignment:
| Q |
10 |
attattcttaaagcaaccactaattattaattaatcctaagaactccgatttattgtatacaatnnnnnnnngttgacccaatattcttcaccccatatg |
109 |
Q |
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| T |
27779995 |
attattctttaaacaaccactaattattaattaatcctaagaactcagatatattgtat-caatacaaaaa-gttcaccctatattctccaccccatatg |
27780092 |
T |
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| Q |
110 |
ttagtacatattcttttccccaaaatattttattcatcttcaaccctttattccctttccnnnnnnnnnnnnn---aacttcttttgtactttcatatct |
206 |
Q |
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| T |
27780093 |
ttagtacatattcttttccccaaaatatattattcatctttaaccctttattccctttccttttttttttttttttaacttcttttgtactttcatatct |
27780192 |
T |
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| Q |
207 |
catcatgcagtcaggttgttgcaaaccaccaacaaaatgtggttacacatttgtgaacccaacatattggattagcccaattaacacaaatgaagacatg |
306 |
Q |
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| T |
27780193 |
cat---gcagtcaggttgttgcaaaccaccaacaaaatgtggttacacatttgtgaacccaacatattggattagcccaattaacacaaatgaagacatg |
27780289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 12640767 - 12640833
Alignment:
| Q |
226 |
tgcaaaccaccaacaaaatgtggttacacatttgtgaacccaacatattggattagcccaattaaca |
292 |
Q |
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| T |
12640767 |
tgcaaaccaccaacacaatgtgcatacacatttgtgaacccaacatattggattagtccaataaaca |
12640833 |
T |
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