View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15631_high_2 (Length: 248)
Name: NF15631_high_2
Description: NF15631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15631_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 4953791 - 4954028
Alignment:
| Q |
2 |
ataacataaaacatgtcaaaatcaattcaaacaagcacgcagtcttaaccatcactgaatcaactttaaaatacaactcgaaatatgagccatcagatct |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4953791 |
ataacataaaacatgtcaaaatcaattcaaacaagcacacagtcttaaccatcactgaatcaactttaaaatacaactcgaaatatgagctgtcagatct |
4953890 |
T |
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| Q |
102 |
ttatggaattgcgtgattacagagaatctaatataaaagacaaggtagatacctttcaggatatttgaatggtttgggaagtttaagatgatctggggtg |
201 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
4953891 |
ttatggaattgcgtgattacagataatctaatataaaagacaaggtagatacctttcaggatatttgaatggtttggggagtttgagatgatctggggtg |
4953990 |
T |
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| Q |
202 |
acaggttttcgcaattcattggagggtagttgatgatg |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
4953991 |
acaggttttcgcaattcattggagggtagttgatgatg |
4954028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 4938082 - 4938319
Alignment:
| Q |
2 |
ataacataaaacatgtcaaaatcaattcaaacaagcacgcagtcttaaccatcactgaatcaactttaaaatacaactcgaaatatgagccatcagatct |
101 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
4938082 |
ataacataaaacatgtcaaaatcaattcaaataagcacgcagtcttaaccatcactgaatcaactttaaaatacaactcgaaatatgagccgtcggatct |
4938181 |
T |
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| Q |
102 |
ttatggaattgcgtgattacagagaatctaatataaaagacaaggtagatacctttcaggatatttgaatggtttgggaagtttaagatgatctggggtg |
201 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| ||||||| |
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| T |
4938182 |
ttatggaattgcgtcattacagagaatctaatataaaagacaaggtagatacctttcaagatatttgaatggtttggggagtttgagatgatatggggtg |
4938281 |
T |
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| Q |
202 |
acaggttttcgcaattcattggagggtagttgatgatg |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
4938282 |
acaggttttcgcaattcattggagggtagttgatgatg |
4938319 |
T |
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