View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15631_high_3 (Length: 231)

Name: NF15631_high_3
Description: NF15631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15631_high_3
NF15631_high_3
[»] chr6 (2 HSPs)
chr6 (1-231)||(4953527-4953757)
chr6 (1-231)||(4937818-4938048)


Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 4953527 - 4953757
Alignment:
Q  1 tcatcatatcagttgggcttgtatacctaacaaaatgaagtaaaaaagaacaattagccaacacataatgatagatagatattcattcactaacccaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4953527 tcatcatatcagttgggcttgtatacctaacaaaatgaagtaaaaaaaaacaattagccaacacataatgatagatagatattcattcactaacccaact 4953626  T
Q  101 atggacacaaaaattgattttgaatgtataaattctttaaaattggtttcaacataaaagtgatttacttttgataaattaaaaaataattgcagaaaca 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4953627 aaggacacaaaaattgattttgaatgtataaattctttaaaattggtttcaacataaaagtgatttacttttgataaattaaaaaataattgcagaaaca 4953726  T
Q  201 aaaattacaaattctagttttaaattagaat 231  Q
    |||||||||||||||||||||||||||||||    
T  4953727 aaaattacaaattctagttttaaattagaat 4953757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 4937818 - 4938048
Alignment:
Q  1 tcatcatatcagttgggcttgtatacctaacaaaatgaagtaaaaaagaacaattagccaacacataatgatagatagatattcattcactaacccaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4937818 tcatcatatcagttgggcttgtatacctaacaaaatgaagtaaaaaataacaattagccaacacataatgatagatagatattcattcactaacccaact 4937917  T
Q  101 atggacacaaaaattgattttgaatgtataaattctttaaaattggtttcaacataaaagtgatttacttttgataaattaaaaaataattgcagaaaca 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4937918 aaggacacaaaaattgattttgaatgtataaattctttaaaattggtttcaacataaaagtgatttacttttgataaatttaaaaataattgcagaaaca 4938017  T
Q  201 aaaattacaaattctagttttaaattagaat 231  Q
    |||||||||||||||||||||||||||||||    
T  4938018 aaaattacaaattctagttttaaattagaat 4938048  T

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