View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15632_high_13 (Length: 368)

Name: NF15632_high_13

Description: NF15632

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15632_high_13

[»] chr5 (2 HSPs)

Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 150; E-Value: 3e-79

Query Start/End: Original strand, 112 - 347

Target Start/End: Original strand, 35475571 - 35475811

Alignment:

Q	112	aagtcaataatcttcttacttactctatatttatggcaatagtaatactgaatacannnnnnnnnaatacgataccaacttattatccctctcnnnnnnn	211	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35475571	aagtcaataatcttcttacttactctatatttatggcaatagtaatactgaatacatttttttttaatacgataccaacttattatccctctcaaaaaaa	35475670	T

Q	212	nnnnn-----gaaacttattatcctcatcctaaaaatgtaaaaaattcctttcatgatatattcttatatttattatactgctgctttatttgtccccct	306	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35475671	aaaaacaaaagaaacttattatcctcatcctaaaaatgtaaaaaattcctttcatgatatattcttatatttattatactactgctttatttgtccccct	35475770	T

Q	307	cacgttcccatatttgaactcaaaatggttgtgatgatgtc	347	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35475771	cacgttcccatatttgaactcacaatggttgtgatgatgtc	35475811	T

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Target: chr5; HSP #2

Raw Score: 41; E-Value: 0.00000000000003

Query Start/End: Original strand, 29 - 125

Target Start/End: Original strand, 35474991 - 35475084

Alignment:

Q	29	catgcacatgttagatgaatttgtggtgtatgcaaaatg--nnnnnnnnnacaggttagattagattagattatataccactctcaagtcaataatctt	125	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35474991	catgcacatgttagatgaatttgtggtgtatgcaaaatgtttttttttttacagg-----ttagattagattatataccactctcaagtcaataatctt	35475084	T

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