View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15632_high_31 (Length: 321)

Name: NF15632_high_31
Description: NF15632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15632_high_31
NF15632_high_31
[»] chr4 (5 HSPs)
chr4 (8-289)||(48912127-48912408)
chr4 (51-285)||(48958264-48958498)
chr4 (6-292)||(48965442-48965725)
chr4 (131-285)||(48961413-48961567)
chr4 (110-237)||(48951399-48951526)
[»] scaffold0536 (2 HSPs)
scaffold0536 (8-285)||(6293-6570)
scaffold0536 (8-289)||(10277-10556)
[»] chr6 (2 HSPs)
chr6 (14-285)||(12589957-12590231)
chr6 (8-239)||(12483246-12483477)
[»] chr2 (3 HSPs)
chr2 (98-239)||(13440363-13440504)
chr2 (90-289)||(13448479-13448675)
chr2 (149-236)||(13455000-13455087)
[»] chr7 (1 HSPs)
chr7 (30-253)||(3417334-3417557)
[»] chr5 (2 HSPs)
chr5 (52-253)||(28385483-28385684)
chr5 (47-239)||(12540848-12541040)
[»] chr8 (1 HSPs)
chr8 (98-239)||(12641353-12641494)


Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 48912127 - 48912408
Alignment:
Q  8 gtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgcacatatgctttggaagccgatgtcatttttcggataaacaac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  48912127 gtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccaatgtcatttttcggataaacaac 48912226  T
Q  108 tttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaaga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48912227 tttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagaatgacaatgaagaggagaaaga 48912326  T
Q  208 aaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggtt 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912327 aaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggtt 48912408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 51 - 285
Target Start/End: Complemental strand, 48958498 - 48958264
Alignment:
Q  51 ataactcggtggtgcacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaatt 150  Q
    ||||||| ||| || |||||||||||||||||  |||| |||| || |||||||||||||||||||||||||| ||||| ||||||||  ||||||||||    
T  48958498 ataactcagtgttgtacatatgctttggaagcatatgttatttatctgataaacaactttatgagattgcgtgtgggatagaagcatcaggtcacgaatt 48958399  T
Q  151 catatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaag 250  Q
      |||||||||||||||| |||||| |||  ||  | || | |||||||||||||| ||| |||||||| || || || ||||||||||  || ||||||    
T  48958398 tgtatgggttgttcctgagaagaaagggaaagaagacgagagtgaagaggagaaaggaaagtggttgccgaaaggattcgaagagagaaacattggaaag 48958299  T
Q  251 aagaaggctatgattattaagggttgggctccaca 285  Q
    ||||| | | |||| |||| ||| ||||| |||||    
T  48958298 aagaaaggtttgatcattagggggtgggccccaca 48958264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 6 - 292
Target Start/End: Complemental strand, 48965725 - 48965442
Alignment:
Q  6 cagtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgcacatatgctttggaagccgatgtcatttttcggataaaca 105  Q
    ||||||| ||||| ||||||||||||||||| || || || | | ||||||| ||| || ||||| ||||||||||||  |||| || |  |||||||||    
T  48965725 cagtgagcgtgcaagagtgtttgagttggctcaattccaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcaggataaaca 48965626  T
Q  106 actttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaa 205  Q
     ||||||||||||||||| |  || ||||||||| |||| || || ||||||||| ||||    || ||  |||  ||| |||| | ||||||||||||     
T  48965625 gctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaag 48965526  T
Q  206 gaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggttctg 292  Q
     |||| ||||| |||||||| || ||||||||||  || |||   ||||||| | ||||||||| |||||||||||| |||||||||    
T  48965525 caaaagtggttaccaaagggattcgaagagagaaacattgga---aagaagggtttgattattaggggttgggctccgcaggttctg 48965442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 131 - 285
Target Start/End: Complemental strand, 48961567 - 48961413
Alignment:
Q  131 gaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttg 230  Q
    ||||||||| ||||||||||  |||||||||||||||| || ||| |||  | | |||| |  |||||||||||||| || |||||||| || || ||||    
T  48961567 gaagcatcgggtcacgaatttgtatgggttgttcctgagaaaaaagggaaagtggatgagagcgaagaggagaaagacaagtggttgccgaaaggatttg 48961468  T
Q  231 aagagagaattatcggaaagaagaaggctatgattattaagggttgggctccaca 285  Q
    |||||||||  || | ||||||||||| | |||| |||||||| ||||| |||||    
T  48961467 aagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccaca 48961413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 237
Target Start/End: Complemental strand, 48951526 - 48951399
Alignment:
Q  110 tatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaa 209  Q
    |||||||||||  ||| ||| |||| |||  || | ||||||||||||||||| || ||||||||  ||| |||| | || | ||| |||||||| ||||    
T  48951526 tatgagattgcaagcgcgatagaagaatcaggttatgaattcatatgggttgtcccagaaaagaaggggaaggagaacgagagtgatgaggagaaggaaa 48951427  T
Q  210 aatggttgccaaaggggtttgaagagag 237  Q
    ||||||| || | || ||||||||||||    
T  48951426 aatggttacccagggagtttgaagagag 48951399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 6293 - 6570
Alignment:
Q  8 gtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgcacatatgctttggaagccgatgtcatttttcggataaacaac 107  Q
    ||||||||||| |||||| ||||||||||  ||||||| | ||||||||| ||| || |||||||||||||||||  ||| | |||  ||||||||||||    
T  6293 gtgagtgtgcatgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaac 6392  T
Q  108 tttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaaga 207  Q
    |||| |||||||| || ||||| ||||||||| ||||| |||||||||||||||||||||| |||||| |||  ||  |||| | ||||||||||||||     
T  6393 tttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcctgagaagaaagggaaagaagatgagagtgaagaggagaaagg 6492  T
Q  208 aaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccaca 285  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||||| | ||||||||| |||||||||||||||    
T  6493 aaaatggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccaca 6570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 10277 - 10556
Alignment:
Q  8 gtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgcacatatgctttggaagccgatgtcatttttcggataaacaac 107  Q
    ||||||||||| |||||| ||||||||||||||| ||| | |||||  || ||| || |||| ||||||||||||| |||| ||||||| ||||||||||    
T  10277 gtgagtgtgcatgagtgtctgagttggcttaacttgaagcgagata--tcagtgttgtacatttgctttggaagcctatgttatttttcagataaacaac 10374  T
Q  108 tttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaaga 207  Q
    ||||||||||||||||| || | ||||||||| || |||||||  |||| ||||||||||| |||||| |||  ||| |||| | | |||||||||||||    
T  10375 tttatgagattgcgtgcagggtagaagcatcgggttacgaatttgtatgagttgttcctgagaagaaagggaaagagaatgagagtcaagaggagaaaga 10474  T
Q  208 aaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggtt 289  Q
    ||||||| | || || || |||||||| ||| |||| | ||||||||||| | ||||||||||||||||||| || ||||||    
T  10475 aaaatggctaccgaaaggatttgaagaaagagttattgcaaagaagaagggtttgattattaagggttgggcccctcaggtt 10556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 14 - 285
Target Start/End: Original strand, 12589957 - 12590231
Alignment:
Q  14 gtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgcacatatgctttggaagccgatgtcatttttcggataaacaactttatg 113  Q
    ||||| |||||| |||||||||| |||||||| | ||||||||| ||| || ||||||||||||| |||  |||  |||| || ||||||||||||||||    
T  12589957 gtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttgggagcatatgctatttctcagataaacaactttatg 12590056  T
Q  114 agattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatg 213  Q
    ||||| |||| || || ||||||||  | ||||||||| |||||||| |||| || || ||| ||| |||  |||| | ||| ||||| ||| |||||||    
T  12590057 agatttcgtgtggcatagaagcatcaggccacgaattcgtatgggttattcccgagaaaaaagggaaggaagatgagagtgatgaggataaacaaaaatg 12590156  T
Q  214 gttgccaaaggggtttgaagagagaattatcg---gaaagaagaaggctatgattattaagggttgggctccaca 285  Q
    |||||| |  || |||||||||||||  || |   |||||||||||| | |||| |||| ||||||||| |||||    
T  12590157 gttgcctagtggatttgaagagagaaacattgggagaaagaagaagggtttgatcattaggggttgggccccaca 12590231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 12483246 - 12483477
Alignment:
Q  8 gtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgcacatatgctttggaagccgatgtcatttttcggataaacaac 107  Q
    ||||| ||||| ||||||   |||||||| ||||| || ||||| || || ||| || ||||||||||||| |||| |||  |||| || |||||||| |    
T  12483246 gtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtacatatgctttgggagcctatgcaatttctctgataaacagc 12483345  T
Q  108 tttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaaga 207  Q
    |||| || ||| | ||||| || ||||||||| || |  |||||||||||||||||||||| || ||| ||| |||  |||| |  || |||||||||||    
T  12483346 tttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggttgttcctgagaaaaaagggaaggaagatgagagcgatgaggagaaaga 12483445  T
Q  208 aaaatggttgccaaaggggtttgaagagagaa 239  Q
    ||| |||||||| ||||| ||||| |||||||    
T  12483446 aaagtggttgccgaagggatttgaggagagaa 12483477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 13440504 - 13440363
Alignment:
Q  98 gataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaag 197  Q
    ||||||||||| |||||||| |||||||  || |||||||| ||||||  ||||||||||||||||||||| |||||| |||  ||  |||| | ||| |    
T  13440504 gataaacaactatatgagatggcgtgcgcaatagaagcatctagtcacccattcatatgggttgttcctgagaagaaagggaaagaagatgagagtgagg 13440405  T
Q  198 aggagaaagaaaaatggttgccaaaggggtttgaagagagaa 239  Q
    | ||||||||||| |||||||||||||| || ||||||||||    
T  13440404 aagagaaagaaaagtggttgccaaagggattcgaagagagaa 13440363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 289
Target Start/End: Complemental strand, 13448675 - 13448479
Alignment:
Q  90 atttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatga 189  Q
    ||||||| ||||||||||| || ||||| || || | ||| ||||||||  |||||  ||||||||||||||||||||| |||||| |||  ||  ||||    
T  13448675 atttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctgagaagaaagggaaagaagatga 13448576  T
Q  190 caatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggtt 289  Q
     |  ||||| ||||||||||| ||||| || ||||| ||||||||||||| ||||||   |||||||| | |||| |||| ||||||||| |||||||||    
T  13448575 gagcgaagaagagaaagaaaagtggttaccgaagggatttgaagagagaaatatcgg---gaagaagggtttgatcattaggggttgggccccacaggtt 13448479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 13455087 - 13455000
Alignment:
Q  149 ttcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagaga 236  Q
    ||||||||||||||||| || |||||| |||  ||  |||| |  |||||||||||| |||| |||||||| ||||| ||||||||||    
T  13455087 ttcatatgggttgttccggagaagaaagggaaagaagatgagagcgaagaggagaaacaaaagtggttgccgaagggatttgaagaga 13455000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 3417334 - 3417557
Alignment:
Q  30 gttggcttaactcgaaacaagataactcggtggtgcacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggat 129  Q
    ||||||| |||||  |||||| |||||| ||| || ||||||| |||||||||  |    |||| || ||||||||||| ||||||||||| | ||  ||    
T  3417334 gttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttaaactatttctctgataaacaactatatgagattgcatacgcaat 3417433  T
Q  130 tgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggttt 229  Q
     ||||||||| |||||  ||||||||||||||||| ||| |||||| | |  ||  |||| || ||||| ||||||||||| |||||||| ||||| |||    
T  3417434 agaagcatcgggtcacccattcatatgggttgttcttgagaagaaaggaaaagaagatgagaacgaagaagagaaagaaaagtggttgccgaagggattt 3417533  T
Q  230 gaagagagaattatcggaaagaag 253  Q
    || |||||||  || |||||||||    
T  3417534 gaggagagaaacattggaaagaag 3417557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 253
Target Start/End: Complemental strand, 28385684 - 28385483
Alignment:
Q  52 taactcggtggtgcacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattc 151  Q
    |||||| || ||| ||||||| |||||||||  |   ||||| || ||||||||||| ||||||||||| ||||   | ||||||||  |||||  ||||    
T  28385684 taactcagttgtgtacatatgttttggaagcataaaccatttctctgataaacaactatatgagattgcatgcgcagtagaagcatcaggtcacccattc 28385585  T
Q  152 atatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaaga 251  Q
    ||||||||||||||||| |||||| |||  ||  |||| |  ||||| ||||||||||| ||| |||||||||| ||||| |||||||  || |||||||    
T  28385584 atatgggttgttcctgagaagaaagggaaagaagatgagatcgaagaagagaaagaaaagtggctgccaaagggatttgaggagagaaacattggaaaga 28385485  T
Q  252 ag 253  Q
    ||    
T  28385484 ag 28385483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 239
Target Start/End: Complemental strand, 12541040 - 12540848
Alignment:
Q  47 caagataactcggtggtgcacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacg 146  Q
    |||| |||||| |||||| ||||||| |||||||||  |  |||||| |  || |||||||| ||||||||||| || |   | |||| |  | |||||     
T  12541040 caagttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacc 12540941  T
Q  147 aattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaa 239  Q
     ||||||||||||||||||||| |||| | |||  ||  |||| | |||||| ||||||||||| ||| |||| ||||| ||||| |||||||    
T  12540940 cattcatatgggttgttcctgagaagagagggaaagaagatgagactgaagaagagaaagaaaagtggatgccgaagggatttgaggagagaa 12540848  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 12641353 - 12641494
Alignment:
Q  98 gataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaag 197  Q
    |||||||||||||| ||||||||| |||| || |||   ||  ||||||||||  |||||||||||||||| |||||| |||   |  |||| | |||||    
T  12641353 gataaacaactttacgagattgcgagcggaatagaaaattcaggtcacgaatttgtatgggttgttcctgagaagaaagggaaaaaagatgagagtgaag 12641452  T
Q  198 aggagaaagaaaaatggttgccaaaggggtttgaagagagaa 239  Q
    ||||||||||||| |||||||| || || || ||||||||||    
T  12641453 aggagaaagaaaagtggttgcctaaaggattcgaagagagaa 12641494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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