View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15632_high_32 (Length: 317)
Name: NF15632_high_32
Description: NF15632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15632_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 31 - 295
Target Start/End: Original strand, 44575294 - 44575558
Alignment:
| Q |
31 |
ccccaaacctcaccctcatgagctatcattgcttcttgcaattaacacaaaccaataataattctatttctttgatggattttgttgtatgtcctaactt |
130 |
Q |
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| T |
44575294 |
ccccaaacctcaccctcatgagctatcattgcttcttgcaattaacacaaaccaataataattctatttctttgatggattttgttgtatgtcctaactt |
44575393 |
T |
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| Q |
131 |
aaaaatcaagtatctccatttctctggcaattattggttaagaactcaacacttcaaaatgttctcttccatttttcccaatttgcaattacttgatttg |
230 |
Q |
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| T |
44575394 |
aaaaataaagtatctccatttgtctggcaattattggttaagaactcaacacttcaaaatgttctcttccatttttcccaatttgcaattacttgatttg |
44575493 |
T |
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| Q |
231 |
agcttttgctattacatatccatagaagatatttgtgaatttgtcaaaaacgagagttgatgatg |
295 |
Q |
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| T |
44575494 |
agcttttgctattacatatccatagaagatatttgtgaatttgtcaaaaacaagagttgatgatg |
44575558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 90 - 272
Target Start/End: Original strand, 32785535 - 32785711
Alignment:
| Q |
90 |
aattctatttctttgatggattttgttgtatgtcctaacttaaaaatcaagtatctccatttctctggcaattattggttaagaactcaacacttcaaaa |
189 |
Q |
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| T |
32785535 |
aattctaattctttgatggattttgttgtaatccctcaattaaa------gtttctccatttggctcgcaattattggttaagagatgaaagcatcagga |
32785628 |
T |
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| Q |
190 |
tgttctcttccatttttcccaatttgcaattacttgatttgagcttttgctattacatatccatagaagatatttgtgaattt |
272 |
Q |
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| T |
32785629 |
tgttttcttctattttttccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattt |
32785711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 269
Target Start/End: Original strand, 1037524 - 1037597
Alignment:
| Q |
196 |
cttccatttttcccaatttgcaattacttgatttgagcttttgctattacatatccatagaagatatttgtgaa |
269 |
Q |
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| T |
1037524 |
cttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaa |
1037597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 12121317 - 12121371
Alignment:
| Q |
196 |
cttccatttttcccaatttgcaattacttgatttgagcttttgctattacatatc |
250 |
Q |
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| T |
12121317 |
cttccgttttccccaatttgcaattgcttgatttgagtttttgctataacatatc |
12121371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 269
Target Start/End: Original strand, 55908588 - 55908661
Alignment:
| Q |
196 |
cttccatttttcccaatttgcaattacttgatttgagcttttgctattacatatccatagaagatatttgtgaa |
269 |
Q |
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| T |
55908588 |
cttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaa |
55908661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 18315121 - 18315171
Alignment:
| Q |
184 |
tcaaaatgttctcttccatttttcccaatttgcaattacttgatttgagct |
234 |
Q |
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| T |
18315121 |
tcaaaatattttcttccattttccccaatttgcagttgcttgatttgagct |
18315171 |
T |
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