View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15632_high_36 (Length: 306)

Name: NF15632_high_36
Description: NF15632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15632_high_36
NF15632_high_36
[»] chr8 (10 HSPs)
chr8 (19-306)||(1963219-1963506)
chr8 (19-306)||(2014923-2015210)
chr8 (19-293)||(2018306-2018580)
chr8 (59-294)||(2011558-2011799)
chr8 (135-283)||(2004645-2004793)
chr8 (135-294)||(1964895-1965054)
chr8 (15-221)||(2436704-2436922)
chr8 (162-282)||(1968843-1968963)
chr8 (26-282)||(2007910-2008172)
chr8 (154-245)||(560656-560747)
[»] chr1 (2 HSPs)
chr1 (23-294)||(5902404-5902678)
chr1 (23-294)||(5905888-5906162)
[»] scaffold0078 (3 HSPs)
scaffold0078 (175-259)||(22055-22139)
scaffold0078 (139-255)||(57348-57464)
scaffold0078 (139-255)||(2805-2921)
[»] scaffold0184 (1 HSPs)
scaffold0184 (139-255)||(15380-15496)
[»] chr6 (2 HSPs)
chr6 (138-243)||(8294628-8294733)
chr6 (138-240)||(33257025-33257127)
[»] scaffold0428 (1 HSPs)
scaffold0428 (138-240)||(1143-1245)
[»] chr7 (2 HSPs)
chr7 (174-255)||(16566461-16566542)
chr7 (174-255)||(16599120-16599201)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 1963506 - 1963219
Alignment:
Q  19 ctgtggtgcccatgatggaataaccatcccttgttcctttgttctctccaagaaccctgaaggtaaaaactgtaaaggatcaacatcagatgctgaaaga 118  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||    
T  1963506 ctgtggtgcccatgatggaacaaccatcccttgttccttggttctctccaaaaacccagatggtaaaaactgtaaaggatcaacatcagatgctgaaaga 1963407  T
Q  119 tatgcagcatttgctgtactacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1963406 tatgcagcatttgctgtactacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcg 1963307  T
Q  219 aaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttattagc 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  1963306 aaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacattgtttgtccaaccatgtcagacactcaaacttattagc 1963219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 2014923 - 2015210
Alignment:
Q  19 ctgtggtgcccatgatggaataaccatcccttgttcctttgttctctccaagaaccctgaaggtaaaaactgtaaaggatcaacatcagatgctgaaaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  2014923 ctgtggtgcccatgatggaataaccatcccttgttcctttgttctctccaagaaccctgaaggtaaaaattgtaaagggtcaacatcagatgctgaaaga 2015022  T
Q  119 tatgcagcatttgctgtactacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcg 218  Q
    ||||||||||| |||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  2015023 tatgcagcattggctgtattacttggtgatcttacaacccataagaatttatgattactcaattccaaacccaaagccagctcattaatttgttcttgcg 2015122  T
Q  219 aaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttattagc 306  Q
    ||||||| |||||||| || ||||| ||||||| |||||||||||| ||||||||||||||||||  |||||| ||||||||||||||    
T  2015123 aaagtgttccaccactcccgaaagacacatacagaactgaacaaggccgttgtttgtccaaccatgccagacattcaaacttattagc 2015210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 2018306 - 2018580
Alignment:
Q  19 ctgtggtgcccatgatggaataaccatcccttgttcctttgttctctccaagaaccctgaaggtaaaaactgtaaaggatcaacatcagatgctgaaaga 118  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  2018306 ctgtggtgcccatgatggaataaccatcccttgttccttttttctctccaagaaccctgaaggtaaaaattgtaaagggtcaacatcagatgctgaaaga 2018405  T
Q  119 tatgcagcatttgctgtactacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcg 218  Q
    ||||||||||| |||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  2018406 tatgcagcattggctgtattacttggtgatcttacaacccataagaatttatgattactcaattccaaacccaaagccagctcattaatttgttcttgcg 2018505  T
Q  219 aaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacact 293  Q
    |||||||||||||||| ||||||||||||||||||||||||||||   | |||||||||||||||  ||||||||    
T  2018506 aaagtgtgccaccactcccaaaagaaacatacaaaactgaacaagtttgctgtttgtccaaccatgccagacact 2018580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 59 - 294
Target Start/End: Original strand, 2011558 - 2011799
Alignment:
Q  59 gttctctccaagaaccctgaaggtaaaaactgtaaaggatcaacatcagat---gctgaaagatatgcagcatttgctg---tactacttggagctctta 152  Q
    ||||||||||| ||||| || |||||||| ||||||| ||||||||||  |   |||||||||||||| ||||| | ||   |||||||||| ||||  |    
T  2011558 gttctctccaaaaacccagatggtaaaaattgtaaagcatcaacatcattttgtgctgaaagatatgctgcattagatgaactactacttggtgctcgca 2011657  T
Q  153 caacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaa 252  Q
    ||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||| || |||||||| ||||||||||| ||||| ||||||||    
T  2011658 caacccataggaatttctgattactcaattccaaacccaaagccagctcaacaatttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaa 2011757  T
Q  253 aactgaacaaggacgttgtttgtccaaccatatcagacactc 294  Q
    |||||||||||   |||||||||| ||||||  |||||||||    
T  2011758 aactgaacaagattgttgtttgtctaaccatgacagacactc 2011799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 283
Target Start/End: Original strand, 2004645 - 2004793
Alignment:
Q  135 tactacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccact 234  Q
    |||||||||| ||||  | |||||| |||||| | | |||||||||||||||||||||||||| |||| ||||||||||||| |||||||| || |||||    
T  2004645 tactacttggtgctcgcaaaacccacaagaatatcttattactcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccact 2004744  T
Q  235 accaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccat 283  Q
     |||||||| ||||||||||||||||||||  | ||||| |||||||||    
T  2004745 cccaaaagacacatacaaaactgaacaaggttgctgtttatccaaccat 2004793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 135 - 294
Target Start/End: Complemental strand, 1965054 - 1964895
Alignment:
Q  135 tactacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccact 234  Q
    |||||||||| ||||  |||||||||| |||||| |||||||||||||| || |||| ||||| || | |||||||||| || |||||||| ||||||||    
T  1965054 tactacttggtgctcacacaacccataggaatttctgattactcaattctaaccccagagccagctgaacaatttgttcgtgtgaaagtgtaccaccact 1964955  T
Q  235 accaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactc 294  Q
     || ||||| |||||||||||||||||||   |||||||||| ||||||  |||||||||    
T  1964954 cccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactc 1964895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 2436922 - 2436704
Alignment:
Q  15 gaacctgtggtgcccatgatggaataaccatcccttgttcctttgttctctccaagaaccctgaaggtaaaaactgtaaaggatcaacatca-------- 106  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||| | ||||||  | |||||||| || ||||| |||||||||            
T  2436922 gaacctgtggtgcccatgatggaataaccatcccttgatccttggttctctctatgaacccacatggtaaaaattgcaaagggtcaacatcattttgtgc 2436823  T
Q  107 -gatgctgaaagatatgcagcatttgctg---tactacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactca 202  Q
     ||  ||||||  ||||| ||| | | ||   ||||| |||| ||||||||||||||||||||||| ||||||||| |||||| ||| ||||||| ||||    
T  2436822 tgaaactgaaaagtatgctgcactagatgaactactatttggtgctcttacaacccataagaatttctgattactcgattccagaccgaaagccagctca 2436723  T
Q  203 tcaatttgttcttgcgaaa 221  Q
     ||||||||||||| ||||    
T  2436722 acaatttgttcttgtgaaa 2436704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 282
Target Start/End: Complemental strand, 1968963 - 1968843
Alignment:
Q  162 agaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaaca 261  Q
    ||||||| | |||||||||||||||||| ||||||| |||  |||||||||| || |||||||| |||||||| || ||||| |||||||||||||| ||    
T  1968963 agaattttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagca 1968864  T
Q  262 aggacgttgtttgtccaacca 282  Q
    |||  | ||||| ||||||||    
T  1968863 aggctgctgtttatccaacca 1968843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 282
Target Start/End: Original strand, 2007910 - 2008172
Alignment:
Q  26 gcccatgatggaataaccatcccttgttcctttgttctctccaagaaccctgaaggtaaaaactgtaaaggatcaacatcagat---gctgaaagatatg 122  Q
    |||||||||| |||||| |  ||||  ||||| ||||||||||||||||| || ||||||||||| ||||  |||| ||||  |   ||||||||||||     
T  2007910 gcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatatcattttctgctgaaagatatc 2008009  T
Q  123 cagcatttgctgtact---acttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcga 219  Q
    | ||| | | || |||   ||| || ||||  | |||||| ||||||||   |||||||||||||||||||||||| | |||  ||||||| || || ||    
T  2008010 ctgcactagatgaactgctactcggtgctcgcaaaacccacaagaattttgtattactcaattccaaacccaaagctagctccacaatttgctcctgtga 2008109  T
Q  220 aagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaacca 282  Q
    |||||| || ||||| |||||||| ||||||||||| ||||||||  | ||||| ||||||||    
T  2008110 aagtgtacctccactcccaaaagatacatacaaaaccgaacaaggttgctgtttatccaacca 2008172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 560656 - 560747
Alignment:
Q  154 aacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaa 245  Q
    ||||||||| |||||||| || || | |||||| ||||| || | ||||| |||||| ||||| ||||||||||| ||||| ||||||||||    
T  560656 aacccataaaaatttatggttgctaagttccaatcccaaggcaagctcattaatttggtcttgtgaaagtgtgcccccacttccaaaagaaa 560747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 23 - 294
Target Start/End: Complemental strand, 5902678 - 5902404
Alignment:
Q  23 ggtgcccatgatggaataaccatcccttgttcctttgttctctccaagaaccctgaaggtaaaaactgtaaaggatcaacatcagat---gctgaaagat 119  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |  ||||||||||| ||| |||||||||||  |   ||||||||||    
T  5902678 ggtgcccatgatggaataaccatcccttgctccttggttctctccaagaacccaggtggtaaaaactgcaaaagatcaacatcattttctgctgaaagat 5902579  T
Q  120 atgcagcatttgctgtactacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcga 219  Q
    ||||| || | |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||    
T  5902578 atgcaccactggctgaactacttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagccaactcatcaatttgttcttgtga 5902479  T
Q  220 aagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactc 294  Q
    |||||  |||||||| |||||||||||||||||||||||||||||  ||||||| |  |||||| ||||||||||    
T  5902478 aagtgcaccaccacttccaaaagaaacatacaaaactgaacaaggttgttgtttatgtaaccatgtcagacactc 5902404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 23 - 294
Target Start/End: Complemental strand, 5906162 - 5905888
Alignment:
Q  23 ggtgcccatgatggaataaccatcccttgttcctttgttctctccaagaaccctgaaggtaaaaactgtaaaggatcaacatcagat---gctgaaagat 119  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| || ||||||| |||  || ||||||||||   |   ||||||||||    
T  5906162 ggtgcccatgatggaataaccattccttgctccttggttctctccaagaacccagatggtaaaacctgcgaaagatcaacatcgttttgtgctgaaagat 5906063  T
Q  120 atgcagcatttgctgtactacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcga 219  Q
    ||||| ||  ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||||| |||||||||| ||    
T  5906062 atgcaccacatgctgaactacttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcagtttgttcttgtga 5905963  T
Q  220 aagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactc 294  Q
    |||||  ||||| || |||||||||||||||||||||||||||||  | ||||| || |||||| ||| ||||||    
T  5905962 aagtgcaccaccgcttccaaaagaaacatacaaaactgaacaaggctgctgtttatctaaccatgtcaaacactc 5905888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 22139 - 22055
Alignment:
Q  175 actcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaa 259  Q
    ||||||||||||||| ||||| | |||||  ||||||  ||| |||||||| |||||||| ||||||||||||||||||||||||    
T  22139 actcaattccaaaccaaaagctagctcattgatttgtgtttgagaaagtgttccaccacttccaaaagaaacatacaaaactgaa 22055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 255
Target Start/End: Complemental strand, 57464 - 57348
Alignment:
Q  139 acttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactacca 238  Q
    |||||| ||||| |||||||| | |||| | |||  ||||||||||||||| ||||| |  ||||  ||||||  ||| |||||||| |||||||| |||    
T  57464 acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcatttatttgtgtttgagaaagtgttccaccacttcca 57365  T
Q  239 aaagaaacatacaaaac 255  Q
    |||||||||||||||||    
T  57364 aaagaaacatacaaaac 57348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 255
Target Start/End: Complemental strand, 2921 - 2805
Alignment:
Q  139 acttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactacca 238  Q
    |||||| ||||| |||||||| | |||| | |||  ||||||||||||||| ||||| |  ||||  || |||  ||| |||||||| |||||||| |||    
T  2921 acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattcatctgtctttgtgaaagtgttccaccacttcca 2822  T
Q  239 aaagaaacatacaaaac 255  Q
    |||||||||||||||||    
T  2821 aaagaaacatacaaaac 2805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 255
Target Start/End: Original strand, 15380 - 15496
Alignment:
Q  139 acttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactacca 238  Q
    |||||| ||||| |||||||| | |||| | |||  ||||||||||||||| ||||| |  ||||  ||||||  ||| |||||||| |||||||| |||    
T  15380 acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcatttatttgtgtttgagaaagtgttccaccacttcca 15479  T
Q  239 aaagaaacatacaaaac 255  Q
    |||||||||||||||||    
T  15480 aaagaaacatacaaaac 15496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 243
Target Start/End: Original strand, 8294628 - 8294733
Alignment:
Q  138 tacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactacc 237  Q
    ||||||||||||| |||||||| |||||||| |||  ||||||||| | ||| ||||| ||||| |  | ||| ||||| || ||||| |||||||| ||    
T  8294628 tacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttcc 8294727  T
Q  238 aaaaga 243  Q
    ||||||    
T  8294728 aaaaga 8294733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 33257127 - 33257025
Alignment:
Q  138 tacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactacc 237  Q
    ||||||||||||| |||||||| ||||| || |||  ||||||||| | ||| ||||| |||||||  | ||| ||||| || ||||| |||||||| ||    
T  33257127 tacttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccacttcc 33257028  T
Q  238 aaa 240  Q
    |||    
T  33257027 aaa 33257025  T

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Target: scaffold0428 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 1245 - 1143
Alignment:
Q  138 tacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactacc 237  Q
    ||||||||||||| |||||||| ||||| || |||  ||||||||| | ||| ||||| |||||||  | ||| ||||| || ||||| |||||||| ||    
T  1245 tacttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccacttcc 1146  T
Q  238 aaa 240  Q
    |||    
T  1145 aaa 1143  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 16566542 - 16566461
Alignment:
Q  174 tactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaac 255  Q
    |||||||||||||||| || || |  |||| ||| |||  ||| |||||||| ||| |||| ||||||||||||||||||||    
T  16566542 tactcaattccaaaccaaaggctagttcattaatctgtctttgagaaagtgttccaacacttccaaaagaaacatacaaaac 16566461  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 16599120 - 16599201
Alignment:
Q  174 tactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaac 255  Q
    |||||||||||||||| || || |  |||| ||| |||  ||| |||||||| ||| |||| ||||||||||||||||||||    
T  16599120 tactcaattccaaaccaaaggctagttcattaatctgtctttgagaaagtgttccaacacttccaaaagaaacatacaaaac 16599201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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