View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15632_high_4 (Length: 428)
Name: NF15632_high_4
Description: NF15632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15632_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 29 - 404
Target Start/End: Complemental strand, 55174550 - 55174175
Alignment:
| Q |
29 |
agaaggttgatccaggcgaaggctcgtttattctgaccacctctctcatcatattgtttgagccgtgtatgtttgcgccaaacaaacatgactcccactc |
128 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
55174550 |
agaaggttgatccaggtgaaggctcgtttattctgaccacctctctcatcatattgtttgagccgtgtatgtttgcgtcaaacaaacatgactcccactc |
55174451 |
T |
|
| Q |
129 |
acaatctcgccttcctttccatattattagttctcttaccagccattgccgcagcacatgatcatggtcgtgttgcaggcattaacaatgttacttatga |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55174450 |
acaatctcgccttcctttccatattattagttctcttaccagccattgtcgcagcacatgatcatggtcgtgttgcaggcattaacaatgttacttatga |
55174351 |
T |
|
| Q |
229 |
tggtaaatcactctttgtcaatggaagacgcgagctcctcttctccggttccatccattacactcgcagcacccctgatgtataattcattcatggnnnn |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55174350 |
tggtaaatcactctttgtcaatggaagacgcgagctcctcttctccggttccatccattacactcgcagcacccctgatgtataattcattcatggtttt |
55174251 |
T |
|
| Q |
329 |
nnnnnnaattactacatccatgatcattacaataatataacaacaacaaatgatggattcataagattgattgatg |
404 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
55174250 |
ttatttaatcactacatccatgatcattacaataatataataacaacagatgatggattcataagattgattgatg |
55174175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 27720258 - 27720302
Alignment:
| Q |
267 |
tcttctccggttccatccattacactcgcagcacccctgatgtat |
311 |
Q |
| |
|
|||||||||||||||||||||| | || |||||||||||||||| |
|
|
| T |
27720258 |
tcttctccggttccatccattatccacgaagcacccctgatgtat |
27720302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University