View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15632_high_8 (Length: 390)
Name: NF15632_high_8
Description: NF15632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15632_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 30 - 366
Target Start/End: Original strand, 38180375 - 38180711
Alignment:
| Q |
30 |
ctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcag |
129 |
Q |
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| T |
38180375 |
ctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcag |
38180474 |
T |
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| Q |
130 |
cggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccg |
229 |
Q |
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| T |
38180475 |
cggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccg |
38180574 |
T |
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| Q |
230 |
ggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagc |
329 |
Q |
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| T |
38180575 |
agatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgtttggcgaattggagagc |
38180674 |
T |
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| Q |
330 |
agggtttatgtgaccgtgtagtgggtatgtgatgatg |
366 |
Q |
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| T |
38180675 |
agggtttatgtgaccgtgtagtgggtatgtgatgatg |
38180711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 30 - 366
Target Start/End: Original strand, 38185044 - 38185380
Alignment:
| Q |
30 |
ctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcag |
129 |
Q |
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| T |
38185044 |
ctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgttagaaattctgagcag |
38185143 |
T |
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| Q |
130 |
cggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccg |
229 |
Q |
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||| ||||||||| || ||||| || |||||||||||||||||||| ||| || ||||||| ||| |||||||||||||||||||| ||||| | |
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| T |
38185144 |
tggcacttaagctcggacctgtaggcgatgaagtcttcgttgctttcgaaatttttaccgtcgtcgtagccatcagagaaggtggcgaaggagaggcctg |
38185243 |
T |
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| Q |
230 |
ggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagc |
329 |
Q |
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| T |
38185244 |
ggatggttggtttgttgataaggccagtgtgtaagtagatagttgtagcaaaagtgacttgtgcgccgaaagaaatgagacgcttggcgaattggagtgc |
38185343 |
T |
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| Q |
330 |
agggtttatgtgaccgtgtagtgggtatgtgatgatg |
366 |
Q |
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| T |
38185344 |
agggtttatgtgaccgtgtagtgggtatgtgatgatg |
38185380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 63 - 366
Target Start/End: Original strand, 38170594 - 38170897
Alignment:
| Q |
63 |
taagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaag |
162 |
Q |
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|||||||||||||||| || ||| |||||| |||||| |||||||||||||||||||| |||| ||| ||| ||| |||| || ||||| ||| | | |
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| T |
38170594 |
taagcaagtgaatggatgattttcttgtttggaggagagaatgatatttgtgagaaattctgagccgcgacgcgtaaactcagacatgtaggagacgatg |
38170693 |
T |
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| Q |
163 |
tcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgta |
262 |
Q |
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| T |
38170694 |
tcttcgtcgccaaaggatttttgaccgtcgtcatagccgtcagagaaggtggcgaaggagaggcccgggatggttggtttgttgataaggcgactgtata |
38170793 |
T |
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| Q |
263 |
agtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgat |
362 |
Q |
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||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| || |
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| T |
38170794 |
agtggatagtggtagcaaaagtgacttttgcgcccaaagaaatgagacgcttggtgaattggagggcagggtttatgtgaccttgtagtgggtatgttat |
38170893 |
T |
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| Q |
363 |
gatg |
366 |
Q |
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|||| |
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| T |
38170894 |
gatg |
38170897 |
T |
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