View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15632_high_9 (Length: 384)
Name: NF15632_high_9
Description: NF15632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15632_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 21 - 323
Target Start/End: Complemental strand, 31541866 - 31541573
Alignment:
| Q |
21 |
gacatcatcacgtgtgaaagatggnnnnnnnctcttagatttttcatgaaaaatttgatgggaaaagtaatcaaattaagtgatctttgatcgcattata |
120 |
Q |
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| T |
31541866 |
gacatcaacacgtgtgaatgatggtttttctctcttagatttttcatgaaaaatttgatgggaaaagcaatcaaattaagtgatctttgatcgcattata |
31541767 |
T |
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| Q |
121 |
ttgtcgctctctctttacagcctataatagttgatggcatactctgttaagtgttaacaatagtgctaatgggaacagtagtttgaaaa-gggttcaacc |
219 |
Q |
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|||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| | ||||||| |||||||||| |
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| T |
31541766 |
ttgttgttctctctttacagcctataatagttgatggtatactctgttaagtgttaacaataatgctaatgggaacagtggcttgaaaaggggttcaacc |
31541667 |
T |
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| Q |
220 |
tcgttaataattaatttaagatcatcnnnnnnnnnnnnnnnnnatatatatattggtccatgatccacctctattcatattacaattacaatttacattc |
319 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31541666 |
tcgttaataattaatttaagatcatc----------tttttttatatatatattggtccatgatccacctctattcatattacaattgcaatttacattc |
31541577 |
T |
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