View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15633_high_3 (Length: 326)

Name: NF15633_high_3
Description: NF15633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15633_high_3
NF15633_high_3
[»] chr3 (1 HSPs)
chr3 (1-291)||(51805950-51806240)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 51805950 - 51806240
Alignment:
Q  1 acaggtgcatcttgttcatgttgagttgttctaagtgagaacagttgattatgctgtttgttgggaacttgaattttgtattaccgaggtttaggacacg 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51805950 acaggtgcatcttgttcatgttgagtagttctaagtgagaacagttgattatgctgtttgttgggaacttgaattttgtattaccgaggtttaggacacg 51806049  T
Q  101 taaatttggaaggtaagagcaaatatttgatgggaagtttccggaaagtgatgaccaacctgaaaaatcaagacttatgatgtctcctttgttgtcacag 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51806050 taaatttggaaggtaagagcaaatatttgacgggaagtttccggaaagtgatgaccaacctgaaaaatcaagacttatgatgtctcctttgttgtcacag 51806149  T
Q  201 gtgattccggtgaagtcgcagattggtttatccactttgcttacaccccaatcaaaagggtagtttcctgagagagactctttcattagag 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51806150 gtgattccggtgaagtcgcagattggtttatccactttgcttacaccccaatcaaaagggtagtttcctgagagagactctttcattagag 51806240  T

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