View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15633_high_4 (Length: 310)

Name: NF15633_high_4
Description: NF15633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15633_high_4
NF15633_high_4
[»] chr3 (15 HSPs)
chr3 (31-290)||(9108743-9109002)
chr3 (94-282)||(8746911-8747099)
chr3 (97-290)||(8755530-8755723)
chr3 (91-231)||(9019296-9019436)
chr3 (91-221)||(9101246-9101376)
chr3 (91-282)||(9029070-9029261)
chr3 (91-269)||(9034590-9034768)
chr3 (99-231)||(8965284-8965416)
chr3 (116-269)||(9015393-9015546)
chr3 (91-225)||(9023464-9023598)
chr3 (128-231)||(8962569-8962672)
chr3 (113-231)||(9112115-9112233)
chr3 (118-231)||(8957129-8957242)
chr3 (99-231)||(8988353-8988485)
chr3 (118-282)||(9026111-9026275)


Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 31 - 290
Target Start/End: Complemental strand, 9109002 - 9108743
Alignment:
Q  31 tatacatagatcatcacttaataatcatcactagcacagaataaaacaaaaataacgactatgtttttagttcttcaagagtgcaagcattgacaagaca 130  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9109002 tatatatagatcatcaattaataatcatcactagcacagaataaaacaaaaataacgactatgtttttagttcttcaagagtgcaagcattgacaagaca 9108903  T
Q  131 attgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggactgaggtcttgagccg 230  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9108902 attgaagctccgatcatggccactgaacttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggactgaggtcttgagccg 9108803  T
Q  231 acaccagggaggcagcaaagataacgacgaaaaagaaggcaaaaaacttcattgatgatg 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9108802 acaccagggaggcagcaaagataacgacgaaaaagaaggcaaaaaacttcattgatgatg 9108743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 94 - 282
Target Start/End: Complemental strand, 8747099 - 8746911
Alignment:
Q  94 tttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacct 193  Q
    |||||||| ||| ||||  || ||||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||  ||||||| ||||||||||||    
T  8747099 tttttagtgcttgaagatggcgagcattgacaacacaattgaaactccaatcatagccactgaatttgtaacagatccaacagctccaacatcaggacct 8747000  T
Q  194 gatgctggagccaatgagggactgaggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaaggcaaaaaacttcat 282  Q
    | |||||||||||| ||||||||||||||||| || ||  |||||| ||| || ||||| | ||||||||||||||  || ||||||||    
T  8746999 ggtgctggagccaacgagggactgaggtcttgggcagaggccagggtggcggcgaagatgaagacgaaaaagaaggagaagaacttcat 8746911  T

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Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 97 - 290
Target Start/End: Complemental strand, 8755723 - 8755530
Alignment:
Q  97 ttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgat 196  Q
    ||||||||| ||||  || ||||| ||||| | ||| |||||||| ||||| || |||||||||||||||||||| ||||| ||| |||||||| ||| |    
T  8755723 ttagttcttgaagatggcgagcatagacaaaataatcgaagctccaatcatagcaactgaatttgtaacagatccagcagcaccggcatcaggatctggt 8755624  T
Q  197 gctggagccaatgagggactgaggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaaggcaaaaaacttcattgatgatg 290  Q
    || |||||||| |||||||||||||||||||||||  ||| ||  || || |||| ||| |||||||||||||| |||||||||||||||||||    
T  8755623 gccggagccaacgagggactgaggtcttgagccgaagccacggctgctgcgaagacaacaacgaaaaagaaggcgaaaaacttcattgatgatg 8755530  T

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Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 91 - 231
Target Start/End: Complemental strand, 9019436 - 9019296
Alignment:
Q  91 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcagga 190  Q
    ||||||| ||||||||||||  |||||||||||||| |||||||||||||||||||| || |||||| | |||||||||||   ||| || |||||||||    
T  9019436 atgttttcagttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactcgtaacagatccacaagccccaacatcagga 9019337  T
Q  191 cctgatgctggagccaatgagggactgaggtcttgagccga 231  Q
    |||| ||| |||||  |||||||||| ||||||||||||||    
T  9019336 cctggtgccggagcggatgagggactaaggtcttgagccga 9019296  T

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Target: chr3; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 91 - 221
Target Start/End: Complemental strand, 9101376 - 9101246
Alignment:
Q  91 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcagga 190  Q
    ||||||||||| ||| ||||  || ||||||||||| ||||||||| |||||||||| ||||||||| |||||||||| || ||||||||  |||||||     
T  9101376 atgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagaaccagcagctccagcatcaggg 9101277  T
Q  191 cctgatgctggagccaatgagggactgaggt 221  Q
    |||| |||||||||||| |||||||||||||    
T  9101276 cctggtgctggagccaacgagggactgaggt 9101246  T

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Target: chr3; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 91 - 282
Target Start/End: Complemental strand, 9029261 - 9029070
Alignment:
Q  91 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcagga 190  Q
    ||||||||||| ||| ||||  || ||||||||||| ||||||||| |||||||||| ||| ||||| |||||| |||||| ||||||||  ||||||||    
T  9029261 atgtttttagtgcttgaagatggcgagcattgacaacacaattgaaactccgatcatagccgctgaacttgtaatagatccagcagctccagcatcagga 9029162  T
Q  191 cctgatgctggagccaatgagggactgaggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaaggcaaaaaacttcat 282  Q
    |||| |||||||||||| || ||||| |||||||| || ||  ||| || ||| || ||||| | ||| ||||||||||  || ||||||||    
T  9029161 cctggtgctggagccaacgaaggactaaggtcttgggcagaggccacggtggcggcgaagatgatgaccaaaaagaaggagaagaacttcat 9029070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 269
Target Start/End: Complemental strand, 9034768 - 9034590
Alignment:
Q  91 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcagga 190  Q
    ||||||||||| ||| ||||  || ||||||||||| ||||||||| |||||||||| ||||| ||| ||| ||||||||| ||||||||  ||||||||    
T  9034768 atgtttttagtgcttgaagatggcgagcattgacaacacaattgaaactccgatcatagccaccgaacttgcaacagatccagcagctccagcatcagga 9034669  T
Q  191 cctgatgctggagccaatgagggactgaggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaagg 269  Q
    |||| ||| |||||||| || ||||| |||||||| || ||  ||| |  |||||| |||||  |||||||||||||||    
T  9034668 cctggtgccggagccaacgaaggactaaggtcttgggcagaggccacgatggcagcgaagatggcgacgaaaaagaagg 9034590  T

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Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 231
Target Start/End: Complemental strand, 8965416 - 8965284
Alignment:
Q  99 agttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgc 198  Q
    ||||||| |||| ||| ||||||||||  |||||||||||||||||||| ||||  ||| ||||||||||||||||||||||  | ||||||| || |||    
T  8965416 agttcttgaagattgcgagcattgacagcacaattgaagctccgatcattgccatagaacttgtaacagatccggcagctccagcgtcaggacttggtgc 8965317  T
Q  199 tggagccaatgagggactgaggtcttgagccga 231  Q
    ||||||||| || ||||| |||||||| |||||    
T  8965316 tggagccaacgacggactaaggtcttgggccga 8965284  T

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Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 269
Target Start/End: Complemental strand, 9015546 - 9015393
Alignment:
Q  116 agcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggac 215  Q
    ||||||||||| ||||||||| |||| | ||| | |||||||||||||||| |||| || |||||| |||||||||||| ||| |||| ||| ||||| |    
T  9015546 agcattgacaatacaattgaaactccaaccatagtcactgaatttgtaacatatccagctgctccggcatcaggacctggtgccggagacaacgaggggc 9015447  T
Q  216 tgaggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaagg 269  Q
    ||||||||||||||||  | |  |||||||| || ||  |||||||||||||||    
T  9015446 tgaggtcttgagccgaggcgatagaggcagccaacatggcgacgaaaaagaagg 9015393  T

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Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 225
Target Start/End: Complemental strand, 9023598 - 9023464
Alignment:
Q  91 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcagga 190  Q
    ||||||||||| ||| ||||  || ||||||||||| ||||  |||  ||||| ||| ||||||||| ||||||||||||| ||||||||  ||||||||    
T  9023598 atgtttttagtgcttgaagatggcgagcattgacaatacaaccgaaattccgaccatagccactgaacttgtaacagatccagcagctccagcatcagga 9023499  T
Q  191 cctgatgctggagccaatgagggactgaggtcttg 225  Q
    |||| ||| |||||||| |||||||| ||||||||    
T  9023498 cctggtgccggagccaacgagggactaaggtcttg 9023464  T

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Target: chr3; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 128 - 231
Target Start/End: Complemental strand, 8962672 - 8962569
Alignment:
Q  128 acaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggactgaggtcttgag 227  Q
    |||||||||||||||||||| ||||| |||  || ||||||||||||| ||||  |||||||||||| ||||||||| || |||||||| |||||||| |    
T  8962672 acaattgaagctccgatcatagccacagaacctgcaacagatccggcaactccagcatcaggacctggtgctggagctaacgagggactaaggtcttggg 8962573  T
Q  228 ccga 231  Q
    ||||    
T  8962572 ccga 8962569  T

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Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 9112233 - 9112115
Alignment:
Q  113 gcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagg 212  Q
    |||||||||||||| |||||  ||||||| ||||| ||||||| |||||||| ||||||  ||||||||  ||||||  ||| ||| |||||||| ||||    
T  9112233 gcaagcattgacaacacaatcaaagctcccatcatagccactggatttgtaagagatccaacagctccggtatcaggtgctggtgccggagccaacgagg 9112134  T
Q  213 gactgaggtcttgagccga 231  Q
    ||||||||||||| |||||    
T  9112133 gactgaggtcttgggccga 9112115  T

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Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 231
Target Start/End: Complemental strand, 8957242 - 8957129
Alignment:
Q  118 cattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggactg 217  Q
    ||||||||  |||||||||||||||||||| ||||| ||| |||||||| |||||||||||||  | |||||||| | ||||||||| || || |||||     
T  8957242 cattgacagcacaattgaagctccgatcatagccacagaacttgtaacaaatccggcagctccagcgtcaggaccgggtgctggagctaacgacggacta 8957143  T
Q  218 aggtcttgagccga 231  Q
    |||||||| |||||    
T  8957142 aggtcttgggccga 8957129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 99 - 231
Target Start/End: Complemental strand, 8988485 - 8988353
Alignment:
Q  99 agttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgc 198  Q
    ||||||| ||||  || ||||||||||  || ||||||||||||||||| |||||  || ||||| |||| | ||||||||| || |||||||||| |||    
T  8988485 agttcttgaagatagcgagcattgacagtacgattgaagctccgatcatagccacataacttgtagcagaactggcagctccaacgtcaggacctggtgc 8988386  T
Q  199 tggagccaatgagggactgaggtcttgagccga 231  Q
    ||||| ||| |||||||| |||||||| |||||    
T  8988385 tggagacaacgagggactaaggtcttgggccga 8988353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 118 - 282
Target Start/End: Complemental strand, 9026275 - 9026111
Alignment:
Q  118 cattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggactg 217  Q
    ||||||||| |||| |||| |||||||||| ||||||||| ||||||||||||| ||| ||||  |||||| ||||| |||||||||||| || |||||     
T  9026275 cattgacaatacaactgaaactccgatcattgccactgaacttgtaacagatccagcaactccagcatcagaacctggtgctggagccaacgaaggacta 9026176  T
Q  218 aggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaaggcaaaaaacttcat 282  Q
    || ||||| || ||  ||| || ||| || ||||| | ||| ||||||||||  || ||||||||    
T  9026175 agatcttgggcagaggccacggtggcggcgaagatgatgaccaaaaagaaggagaagaacttcat 9026111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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