View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15633_high_5 (Length: 309)

Name: NF15633_high_5
Description: NF15633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15633_high_5
NF15633_high_5
[»] chr3 (16 HSPs)
chr3 (8-239)||(8539111-8539342)
chr3 (8-239)||(28037498-28037726)
chr3 (11-221)||(17744352-17744559)
chr3 (11-221)||(19045672-19045879)
chr3 (8-239)||(28151709-28151936)
chr3 (76-223)||(11421063-11421206)
chr3 (81-239)||(28161935-28162090)
chr3 (81-223)||(28185994-28186133)
chr3 (53-184)||(27458745-27458873)
chr3 (81-239)||(28150026-28150181)
chr3 (81-223)||(28479791-28479930)
chr3 (81-223)||(28508974-28509113)
chr3 (8-112)||(11421402-11421506)
chr3 (103-239)||(27920301-27920436)
chr3 (177-231)||(27378544-27378598)
chr3 (87-174)||(28136448-28136532)
[»] chr2 (2 HSPs)
chr2 (16-219)||(8020911-8021109)
chr2 (177-233)||(22393515-22393571)
[»] scaffold0922 (1 HSPs)
scaffold0922 (30-198)||(1840-2003)
[»] scaffold0257 (1 HSPs)
scaffold0257 (107-223)||(19152-19265)
[»] scaffold1142 (1 HSPs)
scaffold1142 (32-115)||(538-621)
[»] scaffold0043 (1 HSPs)
scaffold0043 (177-233)||(52825-52881)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 8539111 - 8539342
Alignment:
Q  8 tgagatgaaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaatatttgagcttactttcatggcaacatcat 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8539111 tgagatggaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaatatttgagcttactttcatggcaacatcat 8539210  T
Q  108 catttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8539211 catttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaag 8539310  T
Q  208 gattcttcaccttgattaatattagtgttact 239  Q
    ||||||||||||||||||||||||||||||||    
T  8539311 gattcttcaccttgattaatattagtgttact 8539342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 28037726 - 28037498
Alignment:
Q  8 tgagatgaaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaatatttgagcttactttcatggcaacatcat 107  Q
    ||||||| |||| ||||| ||||||||||||||||||| || || |||||||||| ||||| || || ||||||||| |||||||||||| ||  |||||    
T  28037726 tgagatgcaatagaagagggtcttgatttggaaactaacatgtcatcatccttagaaaactgatcctcaatatttgaacttactttcatgacattatcat 28037627  T
Q  108 catttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaag 207  Q
    ||||| || || ||||||| | ||||| ||||||| ||||| ||||||   ||||||||||||||||  ||||||||| ||||||||| ||||||||||     
T  28037626 catttggataaactgaacagaaggtggaaaagaagcgagttaaacttc---aaaatgaaaagggtgatgaggtaactttagaaaataacactgatccaaa 28037530  T
Q  208 gattcttcaccttgattaatattagtgttact 239  Q
    || |||| |||||||  |  ||||||||||||    
T  28037529 gagtctttaccttgaccatcattagtgttact 28037498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 17744352 - 17744559
Alignment:
Q  11 gatgaaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaatatttgagcttactttcatggcaacatcatcat 110  Q
    |||| |||||||||  || |||||||||||||||||||||| ||||  |||||||| | || || ||||||||||||||||||||   || |||||||||    
T  17744352 gatgcaatacaagatggtattgatttggaaactaatatttcatcatttttaggaaattgatcctcaatatttgagcttactttcacaacatcatcatcat 17744451  T
Q  111 ttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggat 210  Q
    ||||| || ||| |||||||||| |||||||||||||||||||||   ||||||||||| | ||  |||||||||||||||||||||  ||||||| |||    
T  17744452 ttagagaaactggacaaagggtgagaaagaagagagttcaacttc---aaaatgaaaagagcgatgaggtaacttaagaaaataaaatcgatccaaagat 17744548  T
Q  211 tcttcaccttg 221  Q
    | || ||||||    
T  17744549 tttttaccttg 17744559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 19045672 - 19045879
Alignment:
Q  11 gatgaaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaatatttgagcttactttcatggcaacatcatcat 110  Q
    |||| |||||||||  || |||||||||||||||||||||| ||||  |||||||| | || || ||||||||||||||||||||   || |||||||||    
T  19045672 gatgcaatacaagatggtattgatttggaaactaatatttcatcatttttaggaaattgatcctcaatatttgagcttactttcacaacatcatcatcat 19045771  T
Q  111 ttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggat 210  Q
    ||||| || ||| |||||||||| |||||||||||||||||||||   ||||||||||| | ||  |||||||||||||||||||||  ||||||| |||    
T  19045772 ttagagaaactggacaaagggtgagaaagaagagagttcaacttc---aaaatgaaaagagcgatgaggtaacttaagaaaataaaatcgatccaaagat 19045868  T
Q  211 tcttcaccttg 221  Q
    | || ||||||    
T  19045869 tttttaccttg 19045879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 28151936 - 28151709
Alignment:
Q  8 tgagatgaaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaatatttgagcttactttcatggcaacatcat 107  Q
    ||||||| |||| ||||| |||||||||||||||||||||| |  |||||||| | ||||| || || | ||||||||||| |||||||| ||  |||||    
T  28151936 tgagatgcaatagaagagggtcttgatttggaaactaatatgttatcatcctttgaaaactgatcctcagtatttgagcttgctttcatgacattatcat 28151837  T
Q  108 catttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaag 207  Q
    |||||||| || ||| ||||| | ||||||| ||||||| | ||||||   ||||| ||||||| ||  |||||||||||||||||||||  |||||||     
T  28151836 catttagagaaactg-acaaaagatgggaaacaagagagctaaacttc---aaaataaaaagggcgatgaggtaacttaagaaaataaaagcgatccaaa 28151741  T
Q  208 gattcttcaccttgattaatattagtgttact 239  Q
    |||||||||||||||| |  ||||||||||||    
T  28151740 gattcttcaccttgatcatcattagtgttact 28151709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 223
Target Start/End: Complemental strand, 11421206 - 11421063
Alignment:
Q  76 aatatttgagcttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgac 175  Q
    |||||||| |||| |||||||| || ||||||||||||||  | |||| ||||  |||||||||||||||||||||||||    |||||||||||||||     
T  11421206 aatatttgtgcttgctttcatgacagcatcatcatttagagcaactga-caaacagtgggaaagaagagagttcaacttct---aaatgaaaagggtgat 11421111  T
Q  176 aaggtaacttaagaaaataaaactgatccaaggattcttcaccttgat 223  Q
       |||||||||||||||||||||||||||| || || ||||||||||    
T  11421110 gtcgtaacttaagaaaataaaactgatccaaagagtcatcaccttgat 11421063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 81 - 239
Target Start/End: Complemental strand, 28162090 - 28161935
Alignment:
Q  81 ttgagcttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggt 180  Q
    ||||| ||||||| ||| |  |||| ||||||||| || ||||||||| |||| || |||||||| || |||||||   |||||||||||||||  || |    
T  28162090 ttgaggttacttttatgacggcatcgtcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttca---aaatgaaaagggtgatgagat 28161994  T
Q  181 aacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttact 239  Q
    ||||||||||||||||| |||||||| || ||||||||||||| |  ||||||||||||    
T  28161993 aacttaagaaaataaaattgatccaaagagtcttcaccttgatcatcattagtgttact 28161935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 81 - 223
Target Start/End: Complemental strand, 28186133 - 28185994
Alignment:
Q  81 ttgagcttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggt 180  Q
    ||||| ||||||| ||  || |||||||||||||| || ||||||||| |||| || |||||||| || |||||||   |||||||||||||||  || |    
T  28186133 ttgaggttacttttataacagcatcatcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttca---aaatgaaaagggtgatgagat 28186037  T
Q  181 aacttaagaaaataaaactgatccaaggattcttcaccttgat 223  Q
    ||||||||||||||||| |||||||| || |||||||||||||    
T  28186036 aacttaagaaaataaaattgatccaaagagtcttcaccttgat 28185994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 53 - 184
Target Start/End: Original strand, 27458745 - 27458873
Alignment:
Q  53 tcatccttaggaaactcattctgaatatttgagcttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaac 152  Q
    ||||| |||||||||| ||||| |||||||||||||||||| ||| || |||||||||||||| || |||||||||  || | ||||||||| ||| |||    
T  27458745 tcatcgttaggaaactgattctcaatatttgagcttacttttatgacagcatcatcatttagagaaactgaacaaaaagttgcaaagaagagggttaaac 27458844  T
Q  153 ttcatgaaaatgaaaagggtgacaaggtaact 184  Q
    |||   |||||||||||||||| ||| |||||    
T  27458845 ttc---aaaatgaaaagggtgataagataact 27458873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 239
Target Start/End: Complemental strand, 28150181 - 28150026
Alignment:
Q  81 ttgagcttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggt 180  Q
    ||||| ||||||| | | || |||| ||||||||| || ||||||||| |||| || |||||||| || |||||||   |||||||||||||||  || |    
T  28150181 ttgaggttacttttacgacagcatcctcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttca---aaatgaaaagggtgatgagat 28150085  T
Q  181 aacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttact 239  Q
    ||||||||||||||||| |||||| | || ||||||||||||| |  ||||||||||||    
T  28150084 aacttaagaaaataaaattgatcctaagactcttcaccttgatcatcattagtgttact 28150026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 223
Target Start/End: Original strand, 28479791 - 28479930
Alignment:
Q  81 ttgagcttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggt 180  Q
    ||||| ||||||| ||| ||  ||||||||||| | || |||| |||| |||| || |||||||| || |||||||   ||||| |||||||||  ||||    
T  28479791 ttgaggttacttttatgacagaatcatcatttacagaaactgagcaaaaggtgtgagagaagagaattaaacttca---aaatgcaaagggtgatgaggt 28479887  T
Q  181 aacttaagaaaataaaactgatccaaggattcttcaccttgat 223  Q
    || |||||||||||||| |||||||| || |||||||||||||    
T  28479888 aaattaagaaaataaaattgatccaaagagtcttcaccttgat 28479930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 223
Target Start/End: Original strand, 28508974 - 28509113
Alignment:
Q  81 ttgagcttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggt 180  Q
    ||||| ||||||| ||| ||  ||||||||||| | || |||| |||| |||| || |||||||| || |||||||   ||||| |||||||||  ||||    
T  28508974 ttgaggttacttttatgacagaatcatcatttacagaaactgagcaaaaggtgtgagagaagagaattaaacttca---aaatgcaaagggtgatgaggt 28509070  T
Q  181 aacttaagaaaataaaactgatccaaggattcttcaccttgat 223  Q
    || |||||||||||||| |||||||| || |||||||||||||    
T  28509071 aaattaagaaaataaaattgatccaaagagtcttcaccttgat 28509113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 11421506 - 11421402
Alignment:
Q  8 tgagatgaaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaatatttgagcttactttcatggcaacatcat 107  Q
    ||||||| |||| ||||| |||||||||||||||||||||| || |||||| |||||||||  | || | ||||||| ||||||||| ||  | ||||||    
T  11421506 tgagatgcaatataagagggtcttgatttggaaactaatatatcatcatccgtaggaaactgttcctcagtatttgatcttactttcttgaaagcatcat 11421407  T
Q  108 cattt 112  Q
    |||||    
T  11421406 cattt 11421402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 239
Target Start/End: Complemental strand, 27920436 - 27920301
Alignment:
Q  103 atcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaa---cttaagaaaataaaact 199  Q
    ||||||||||||| || |||  |||| ||||||||||||||||||| ||||||   |||||||||| |||||  ||||||   |||| ||||| || |||    
T  27920436 atcatcatttagagaaactgtccaaaaggtgggaaagaagagagttaaacttc---aaaatgaaaa-ggtgatgaggtaattgcttatgaaaacaacact 27920341  T
Q  200 gatccaaggattcttcaccttgattaatattagtgttact 239  Q
     |||||| || | ||||||||||| |  ||||||||||||    
T  27920340 aatccaaagagttttcaccttgatcatcattagtgttact 27920301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 27378598 - 27378544
Alignment:
Q  177 aggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatatta 231  Q
    ||||||| ||||||||||||| ||||||||  | ||||||||||||||| |||||    
T  27378598 aggtaacataagaaaataaaattgatccaaaaagtcttcaccttgattattatta 27378544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 174
Target Start/End: Complemental strand, 28136532 - 28136448
Alignment:
Q  87 ttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtga 174  Q
    ||||||| ||| || |||||||||||| | || ||||||||| |||| || ||||||||||| || |||   ||||||||||||||||    
T  28136532 ttacttttatgacagcatcatcatttacagaaactgaacaaatggtgtgagagaagagagttaaagttc---aaaatgaaaagggtga 28136448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 8021109 - 8020911
Alignment:
Q  16 aatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaatatttgagcttactttcatggcaacatcatcatttaga 115  Q
    |||| ||||| ||||||||||||||||||||||||| || ||||| |||||||  | || ||||||||| |||||||||||| || | ||||||||||||    
T  8021109 aatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttaga 8021010  T
Q  116 aaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttc 215  Q
     || ||| | ||| |||||||||||||| || | ||||||   ||||||||||||| ||  || ||||||||||||| ||||| ||||||| ||||||||    
T  8021009 gaaactg-agaaaaggtgggaaagaaga-aggttaacttc---aaaatgaaaagggcgatgagataacttaagaaaagaaaaccgatccaaagattcttc 8020915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 22393571 - 22393515
Alignment:
Q  177 aggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagt 233  Q
    ||||||| ||||||||||||| ||||||||  | |||||||||||||| ||||||||    
T  22393571 aggtaacataagaaaataaaattgatccaaaaagtcttcaccttgattgatattagt 22393515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 30 - 198
Target Start/End: Complemental strand, 2003 - 1840
Alignment:
Q  30 ttgatttggaaactaatatttcttcatccttaggaaactcattctgaatatttgagcttactttcatggcaacatcatcatttagaaaagctgaacaaag 129  Q
    |||||||||||||||||||||| ||||||||| |||| | || || ||||| ||||||||||||||||  | |||||||||||| |||| |||||||||     
T  2003 ttgatttggaaactaatatttcatcatccttaagaaattgatcctcaatatctgagcttactttcatgatagcatcatcatttaaaaaaactgaacaaaa 1904  T
Q  130 ggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaac 198  Q
     |||||||| |  |||||  ||||||   ||||||||||||||||   |||||||||||||||||||||    
T  1903 tgtgggaaata--agagtcaaacttc---aaaatgaaaagggtgatgtggtaacttaagaaaataaaac 1840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 19265 - 19152
Alignment:
Q  107 tcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaa 206  Q
    ||||||||| || ||||||||| |||| || ||||||||||| || ||||   |||||||||||||||  ||||||||||||||||||| | ||||||||    
T  19265 tcatttagagaaactgaacaaaaggtgtgagagaagagagttaaatttca---aaatgaaaagggtgatgaggtaacttaagaaaataatattgatccaa 19169  T
Q  207 ggattcttcaccttgat 223  Q
     || |||||||||||||    
T  19168 agagtcttcaccttgat 19152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 621 - 538
Alignment:
Q  32 gatttggaaactaatatttcttcatccttaggaaactcattctgaatatttgagcttactttcatggcaacatcatcatttaga 115  Q
    |||| ||||| || |||||| ||||||||||||||||  | || ||||||| |||||||||||||| ||||||| |||||||||    
T  621 gattgggaaattattatttcatcatccttaggaaactgttcctcaatatttaagcttactttcatgacaacatcgtcatttaga 538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 52825 - 52881
Alignment:
Q  177 aggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagt 233  Q
    ||||||| ||||||||||||| ||||||||  | |||||||||||||| ||||||||    
T  52825 aggtaacataagaaaataaaattgatccaaaaagtcttcaccttgattgatattagt 52881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University