View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15634_high_3 (Length: 464)
Name: NF15634_high_3
Description: NF15634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15634_high_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 111 - 464
Target Start/End: Original strand, 32287567 - 32287922
Alignment:
| Q |
111 |
cataaattatacaatgtccctactccctaccaactgac---ctaagcggaaacctcccctcttattttacttctnnnnnnnnttgaacttaatttagatg |
207 |
Q |
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| T |
32287567 |
cataaattatgcaatgtccctactccctaccaactaacaacctaagcgggaacctccccttttattttacttctaaaaaaa-ttgaacttaatttagata |
32287665 |
T |
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| Q |
208 |
taggctctgtttggtaaattacttttgattattaataatgtggaaattaaaggttaagatctccttaattttttatttgtggccaaatatattttccaca |
307 |
Q |
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| T |
32287666 |
taggctctgtttggtaaattacttttgattattaataatgtggaaattaaaggttaagatctccttaattttttatttgtggccaaatatattttccaca |
32287765 |
T |
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| Q |
308 |
tttccgagtccttctccttcctccgagcaccgcaccgatgataccagaatttgttatcaatttgagaccataaatacgtgttgagtgtgtccaatccatc |
407 |
Q |
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| T |
32287766 |
tttccgagtccttctccttcctccgagcaccgcaccgatgataccagaatttgttatcaatttgagaccatacatacgtgtcgagtgtgtccaatccatc |
32287865 |
T |
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| Q |
408 |
caacccaacgtggcagatgctgtataagccacggtggcatcaatgctactcctcact |
464 |
Q |
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| T |
32287866 |
caacccaacgtggcagatgctgtataagccacggtggcatcaatgctactcctcact |
32287922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 32287417 - 32287503
Alignment:
| Q |
2 |
atttcaaccccaagcaaaagaaaatgataatttttgtggttgcctttactaatctctcaactcttatttatttatttttggtttaat |
88 |
Q |
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| T |
32287417 |
atttcaaccccaagcaaaagaaaatgataatttttgtggttgcctttactaatctctcccctcttatttatttatttttggtctaat |
32287503 |
T |
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