View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15634_high_4 (Length: 382)

Name: NF15634_high_4
Description: NF15634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15634_high_4
NF15634_high_4
[»] chr1 (4 HSPs)
chr1 (16-311)||(26086998-26087301)
chr1 (296-382)||(26086836-26086922)
chr1 (216-296)||(328304-328384)
chr1 (219-285)||(4770522-4770587)
[»] chr8 (7 HSPs)
chr8 (16-169)||(30648361-30648514)
chr8 (20-150)||(28865518-28865648)
chr8 (20-166)||(14726794-14726940)
chr8 (80-166)||(26088718-26088804)
chr8 (28-150)||(15329429-15329551)
chr8 (28-150)||(15509798-15509920)
chr8 (216-285)||(13206836-13206905)
[»] chr7 (4 HSPs)
chr7 (79-150)||(6611950-6612021)
chr7 (214-296)||(41162711-41162793)
chr7 (219-263)||(30588130-30588174)
chr7 (217-296)||(15037177-15037256)
[»] chr3 (3 HSPs)
chr3 (216-296)||(42314173-42314253)
chr3 (18-75)||(4819300-4819357)
chr3 (216-263)||(52259344-52259391)
[»] chr2 (3 HSPs)
chr2 (216-296)||(18961471-18961551)
chr2 (219-281)||(34973138-34973199)
chr2 (222-263)||(6452109-6452150)
[»] chr5 (4 HSPs)
chr5 (215-263)||(11891985-11892033)
chr5 (215-285)||(4524083-4524153)
chr5 (215-245)||(20483032-20483062)
chr5 (214-262)||(26188269-26188317)
[»] chr6 (2 HSPs)
chr6 (219-285)||(16388647-16388713)
chr6 (215-260)||(21813902-21813947)
[»] chr4 (1 HSPs)
chr4 (216-262)||(37433786-37433832)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 26087301 - 26086998
Alignment:
Q  16 aatatgaggcccttcaagtacttgttggatggctcaaaacaaataaacaaagaggcgctgtagagctggaaaatggaatattaaacaagagggacgatgc 115  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26087301 aatatgaggcccttcaagtacttgttggatggctcgaaacaaataaacaaagaggcgctgtagagctggaaaatggaatattaaacaagagggacgatgc 26087202  T
Q  116 aggcaacaccattttgcatgtttcagcactaagtattgagctgcaggtaatcttaggttgaatgcgtttatacacaaagggtaatctagtacaagtcat- 214  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||     
T  26087201 aggcaacaccattttgcatgtttcagcactaagtattgagccgcaggtaatcttacgttgaatgcatttatacacaaagggtaatctagtacaagtcata 26087102  T
Q  215 -------agacaaatttattacttcaacaacttttcttgatacacgtgatttttgttacatgttcttataaaaagggatggagagagtatttcttttttg 307  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26087101 catattcagacaaatttattacttcaacaacttttcttgatacacgtgatttttgttacatgttcttataaaaagggatggagagagtatttctattttg 26087002  T
Q  308 cttt 311  Q
    ||||    
T  26087001 cttt 26086998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 296 - 382
Target Start/End: Complemental strand, 26086922 - 26086836
Alignment:
Q  296 atttcttttttgctttgttgtaattaattgtcgtatttcttgaaaacaagaaagacaacttgtaaataagatttgtggctttgttgc 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  26086922 atttcttttttgctttgttgtaattaattgtcgtatttcttgaaaacaagaaagacaacttataaataagatttgtggcattgttgc 26086836  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 296
Target Start/End: Complemental strand, 328384 - 328304
Alignment:
Q  216 gacaaatttattacttcaacaacttttcttgatacacgtgatttttgttacatgttcttataaaaagggatggagagagta 296  Q
    ||||| |||||||||  ||||||||||||| |||| | |||||||||| | ||  ||||||||||||||| |||| |||||    
T  328384 gacaattttattactcaaacaacttttcttaatactcttgatttttgtaaaatactcttataaaaagggacggagggagta 328304  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 4770587 - 4770522
Alignment:
Q  219 aaatttattacttcaacaacttttcttgatacacgtgatttttgttacatgttcttataaaaaggga 285  Q
    |||| |||||||||||||| |||||   |||| | ||||||||||||||| ||||||||||||||||    
T  4770587 aaatgtattacttcaacaaattttcca-atactcatgatttttgttacatattcttataaaaaggga 4770522  T

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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 30648361 - 30648514
Alignment:
Q  16 aatatgaggcccttcaagtacttgttggatggctcaaaacaaataaacaaagaggcgctgtagagctggaaaatggaatattaaacaagagggacgatgc 115  Q
    |||||||||||||||||||||||||| | |||||||||| ||||| ||| ||||| |||  | |||||||||||  |||||||||| | |||||  | ||    
T  30648361 aatatgaggcccttcaagtacttgttagctggctcaaaaaaaatacacagagaggggctcaaaagctggaaaataaaatattaaaccaaagggataaggc 30648460  T
Q  116 aggcaacaccattttgcatgtttcagcactaagtattgagctgcaggtaatctt 169  Q
    | ||||||| ||||||||| ||||||||||||||| ||| | ||||||||||||    
T  30648461 aagcaacacaattttgcatatttcagcactaagtagtgacccgcaggtaatctt 30648514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 28865518 - 28865648
Alignment:
Q  20 tgaggcccttcaagtacttgttggatggctcaaaacaaataaacaaagaggcgctgtagagctggaaaatggaatattaaacaagagggacgatgcaggc 119  Q
    ||||||| ||||||| ||||||||||||||| ||| |||| |||  || ||||||| ||||||||| | | ||||||||||| ||| ||| || |||||     
T  28865518 tgaggcctttcaagtgcttgttggatggctcgaaaaaaatgaacggagtggcgctgaagagctggagagtagaatattaaacgagaaggatgaggcagga 28865617  T
Q  120 aacaccattttgcatgtttcagcactaagta 150  Q
    ||||  ||||| |||||| ||||||||||||    
T  28865618 aacagtattttacatgttgcagcactaagta 28865648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 14726794 - 14726940
Alignment:
Q  20 tgaggcccttcaagtacttgttggatggctcaaaacaaataaacaaagaggcgctgtagagctggaaaatggaatattaaacaagagggacgatgcaggc 119  Q
    |||||| ||||||||||||||||| |||||||||  ||||    | ||||| |||| | | || ||||||   ||||||||| | ||||| || |  |||    
T  14726794 tgaggcacttcaagtacttgttggctggctcaaagaaaattgtaagagaggtgctgaaaacctagaaaataatatattaaaccaaagggatgaggacggc 14726893  T
Q  120 aacaccattttgcatgtttcagcactaagtattgagctgcaggtaat 166  Q
    ||||||||||||||| ||||||| ||||||| |||||||||||||||    
T  14726894 aacaccattttgcatatttcagccctaagtagtgagctgcaggtaat 14726940  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 26088718 - 26088804
Alignment:
Q  80 gctggaaaatggaatattaaacaagagggacgatgcaggcaacaccattttgcatgtttcagcactaagtattgagctgcaggtaat 166  Q
    |||||||||| ||||||||||| || |||| || ||| ||||||| ||||||||| ||||||||||| ||| ||| | |||||||||    
T  26088718 gctggaaaatagaatattaaaccagtgggatgaggcacgcaacacgattttgcatatttcagcactacgtagtgacccgcaggtaat 26088804  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 15329429 - 15329551
Alignment:
Q  28 ttcaagtacttgttggatggctcaaaacaaataaacaaagaggcgctgtagagctggaaaatggaatattaaacaagagggacgatgcaggcaacaccat 127  Q
    ||||||| |||||||| |||||| ||| ||||||||  || ||||||  ||||| | | | | ||||||||||| ||||||| || ||||| ||||| ||    
T  15329429 ttcaagtgcttgttgggtggctcgaaaaaaataaacggaggggcgctaaagagcggaagagtagaatattaaacgagagggatgaggcaggaaacacaat 15329528  T
Q  128 tttgcatgtttcagcactaagta 150  Q
    ||| ||  || ||||||||||||    
T  15329529 tttacacattgcagcactaagta 15329551  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 15509798 - 15509920
Alignment:
Q  28 ttcaagtacttgttggatggctcaaaacaaataaacaaagaggcgctgtagagctggaaaatggaatattaaacaagagggacgatgcaggcaacaccat 127  Q
    ||||||| |||||||| |||||| ||| ||||||||  || ||||||  ||||| | | | | ||||||||||| ||||||| || ||||| ||||| ||    
T  15509798 ttcaagtgcttgttgggtggctcgaaaaaaataaacggaggggcgctaaagagcggaagagtagaatattaaacgagagggatgaggcaggaaacacaat 15509897  T
Q  128 tttgcatgtttcagcactaagta 150  Q
    ||| ||  || ||||||||||||    
T  15509898 tttacacattgcagcactaagta 15509920  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 13206836 - 13206905
Alignment:
Q  216 gacaaatttattacttcaacaacttttcttgatacacgtgatttttgttacatgttcttataaaaaggga 285  Q
    ||||||||||||||| | ||||||||| || |||| |||||||||| | | ||  |||||||||||||||    
T  13206836 gacaaatttattactcccacaactttttttaatactcgtgatttttataaaatagtcttataaaaaggga 13206905  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 6612021 - 6611950
Alignment:
Q  79 agctggaaaatggaatattaaacaagagggacgatgcaggcaacaccattttgcatgtttcagcactaagta 150  Q
    |||||||||||  |||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  6612021 agctggaaaatcaaatattaaacaagagggatgaggcaggcaacaccattttgcatatttcagcactaagta 6611950  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 296
Target Start/End: Complemental strand, 41162793 - 41162711
Alignment:
Q  214 tagacaaatttattacttcaacaacttttcttgatacacgtgatttttgttacatgttcttataaaaagggatggagagagta 296  Q
    ||||||||||||||| | |||||||||||||| |||| |||||||| ||||| | |||| ||||| ||||| ||||| |||||    
T  41162793 tagacaaatttattagtccaacaacttttcttaatacccgtgatttatgttagaggttcctataataagggctggagggagta 41162711  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 30588174 - 30588130
Alignment:
Q  219 aaatttattacttcaacaacttttcttgatacacgtgatttttgt 263  Q
    ||||||||||||||||||||||||||| ||||  |||||||||||    
T  30588174 aaatttattacttcaacaacttttcttaataccagtgatttttgt 30588130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 296
Target Start/End: Complemental strand, 15037256 - 15037177
Alignment:
Q  217 acaaatttattacttcaacaacttttcttgatacacgtgatttttgttacatgttcttataaaaagggatggagagagta 296  Q
    |||||||||||||| |||  ||||||||| |||| |||||||||||||||| | |   ||||||||||| |||| |||||    
T  15037256 acaaatttattactccaatgacttttcttaatacccgtgatttttgttacaaggttcgataaaaagggacggagggagta 15037177  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 296
Target Start/End: Original strand, 42314173 - 42314253
Alignment:
Q  216 gacaaatttattacttcaacaacttttcttgatacacgtgatttttgttacatgttcttataaaaagggatggagagagta 296  Q
    ||||||||||||||| |||||||||||||| |||| | |||||||||| | ||  ||||||||||||||| |||| |||||    
T  42314173 gacaaatttattactccaacaacttttcttaatactcttgatttttgtaaaatactcttataaaaagggacggagggagta 42314253  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 4819300 - 4819357
Alignment:
Q  18 tatgaggcccttcaagtacttgttggatggctcaaaacaaataaacaaagaggcgctg 75  Q
    ||||||||||||||||| ||| | || |||||||||||||||||||||||||| ||||    
T  4819300 tatgaggcccttcaagtgcttctcggctggctcaaaacaaataaacaaagaggtgctg 4819357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 52259344 - 52259391
Alignment:
Q  216 gacaaatttattacttcaacaacttttcttgatacacgtgatttttgt 263  Q
    ||||||||||||||| |||||||||||||| |||| | ||||||||||    
T  52259344 gacaaatttattactccaacaacttttcttaatacccatgatttttgt 52259391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 296
Target Start/End: Original strand, 18961471 - 18961551
Alignment:
Q  216 gacaaatttattacttcaacaacttttcttgatacacgtgatttttgttacatgttcttataaaaagggatggagagagta 296  Q
    ||||||||||||||| ||||||| |||||| |||| ||||||| |||| | | | |||||||||||||||||||| |||||    
T  18961471 gacaaatttattactccaacaacatttcttaatacccgtgattgttgtaagacggtcttataaaaagggatggagggagta 18961551  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 281
Target Start/End: Original strand, 34973138 - 34973199
Alignment:
Q  219 aaatttattacttcaacaacttttcttgatacacgtgatttttgttacatgttcttataaaaa 281  Q
    ||||||||||||||||||||||||||| ||| |  ||||||||| |||| | |||||||||||    
T  34973138 aaatttattacttcaacaacttttcttaatataaatgatttttg-tacaaggtcttataaaaa 34973199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 6452109 - 6452150
Alignment:
Q  222 tttattacttcaacaacttttcttgatacacgtgatttttgt 263  Q
    |||||||||||||||||||||||| ||||  |||||||||||    
T  6452109 tttattacttcaacaacttttcttaatacctgtgatttttgt 6452150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 11891985 - 11892033
Alignment:
Q  215 agacaaatttattacttcaacaacttttcttgatacacgtgatttttgt 263  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||||||    
T  11891985 agacaattttattacttcaacaacttttcttaatactcgtgatttttgt 11892033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 285
Target Start/End: Original strand, 4524083 - 4524153
Alignment:
Q  215 agacaaatttattacttcaacaacttttcttgatacacgtgatttttgttaca-tgttcttataaaaaggga 285  Q
    |||||||||||||||| |||||||||||||| |||| |||| ||||| ||| | ||||||||| ||||||||    
T  4524083 agacaaatttattactccaacaacttttcttaatacccgtg-ttttttttagagtgttcttattaaaaggga 4524153  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 245
Target Start/End: Complemental strand, 20483062 - 20483032
Alignment:
Q  215 agacaaatttattacttcaacaacttttctt 245  Q
    |||||||||||||||||||||||||||||||    
T  20483062 agacaaatttattacttcaacaacttttctt 20483032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 26188317 - 26188269
Alignment:
Q  214 tagacaaatttattacttcaacaacttttcttgatacacgtgatttttg 262  Q
    ||||||||||||||| | |||||||||||| | |||| |||||||||||    
T  26188317 tagacaaatttattagtccaacaacttttcgtaatacccgtgatttttg 26188269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 16388647 - 16388713
Alignment:
Q  219 aaatttattacttcaacaacttttcttgatacacgtgatttttgttacatgttcttataaaaaggga 285  Q
    ||||||||| || |||||||||||||| ||||  || |||||||||| ||||||| |||||||||||    
T  16388647 aaatttatttctccaacaacttttcttaatacctgtaatttttgttaaatgttctgataaaaaggga 16388713  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 21813947 - 21813902
Alignment:
Q  215 agacaaatttattacttcaacaacttttcttgatacacgtgatttt 260  Q
    |||||||||||||||| |||||||||||||| |||| ||| |||||    
T  21813947 agacaaatttattactccaacaacttttcttaatacccgtaatttt 21813902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 37433786 - 37433832
Alignment:
Q  216 gacaaatttattacttcaacaacttttcttgatacacgtgatttttg 262  Q
    |||||||||||||||||||||| ||||||| |||| | |||||||||    
T  37433786 gacaaatttattacttcaacaatttttcttaatactcatgatttttg 37433832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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