View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15634_high_6 (Length: 342)
Name: NF15634_high_6
Description: NF15634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15634_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 15554034 - 15553697
Alignment:
| Q |
1 |
ttacccaggtcagcttgttttgctctttaatttcaaatttaagctactccaataaaaattgtgattcaaatgaaaagtaggcctttttaaaggctcacca |
100 |
Q |
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| T |
15554034 |
ttacccaggtcaacttgttttgctctttaatttcaaatttaagctattccaagaaaaattgtgatccaaatgaaaag---gcccttttaaaggctcacca |
15553938 |
T |
|
| Q |
101 |
tatggagcagtcgaattggaagatcctgcttgcaatgatactttcaagctaaatggacagagacttaaaccatatatgtggaatcaagaagaaatgttga |
200 |
Q |
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| T |
15553937 |
tatggagcagtcgaattggaagatcctgcttgcaatgatactttcaagctaaatggacagagccttaaacgatatatgtggaatcaagaagaaatgttta |
15553838 |
T |
|
| Q |
201 |
tggtgaaggatgtgtatcttcgagatgcaacgtaaacatacccgtcaggctcgagacgtaaaacaacgctgaagttaagattttaataagttaatatttc |
300 |
Q |
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|||||| ||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15553837 |
aggtgaaagatatgtatctttgagatgcaacgtaaacatacacgtcaggctcgagacgtaaaacagcgctgaagttaagattttaataagttaatatttc |
15553738 |
T |
|
| Q |
301 |
ttgtcattaacaattacttgctttaatctctgctcctcctc |
341 |
Q |
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||||| ||||||||||||||||||||| | |||| |||||| |
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| T |
15553737 |
ttgtccttaacaattacttgctttaatttttgctactcctc |
15553697 |
T |
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