View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15635_high_2 (Length: 348)
Name: NF15635_high_2
Description: NF15635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15635_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 31 - 329
Target Start/End: Original strand, 52987858 - 52988156
Alignment:
| Q |
31 |
aaactaccagcccctgaatgtccatgcctgccacagcattccttcatgtagctcttgcaacatccaccaacttctctcttgtcaaaactaatgcaagcat |
130 |
Q |
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| T |
52987858 |
aaactaccagcccctgaatgtccatgcctgccacagcattccttcatgtagctcttgcaacatccaccaacttctctcttgtcaaaactaatgcaagcat |
52987957 |
T |
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| Q |
131 |
gcataattgacgattcgatcgattcctttgaatagccctcactcttgcatcatggactaacttccctcccatttggaccctcacagccaccacgcacaac |
230 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
52987958 |
gcataattgacgattctatcgattcctttgaatagccctcattcttgcaacatggactaacttccctctcatttggaccctcacagccaccacacacaac |
52988057 |
T |
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| Q |
231 |
aggcaatttggggcagtcggtacaagaatctttttctttctctgccggacttgaacaaccatgcatcgaggctaattcaacgtgctcggtgatgatgtc |
329 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
52988058 |
aggcaatttggggcagtctttacaagaatctttttctttctctgccagatttgaacaaccatgcatcgaggctaattcaacgtgctcggttatgatgtc |
52988156 |
T |
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