View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15635_high_3 (Length: 335)

Name: NF15635_high_3
Description: NF15635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15635_high_3
NF15635_high_3
[»] chr3 (1 HSPs)
chr3 (1-324)||(17579249-17579572)
[»] scaffold0011 (1 HSPs)
scaffold0011 (89-299)||(17302-17512)
[»] chr2 (1 HSPs)
chr2 (99-299)||(16381787-16381987)
[»] chr7 (1 HSPs)
chr7 (32-73)||(37405659-37405700)
[»] chr8 (1 HSPs)
chr8 (32-60)||(14935571-14935599)
[»] chr6 (4 HSPs)
chr6 (32-60)||(15866574-15866602)
chr6 (32-60)||(15868386-15868414)
chr6 (32-60)||(32079904-32079932)
chr6 (32-60)||(33869240-33869268)
[»] chr5 (3 HSPs)
chr5 (32-60)||(25076325-25076353)
chr5 (32-60)||(25134294-25134322)
chr5 (32-60)||(39787268-39787296)
[»] chr4 (4 HSPs)
chr4 (32-60)||(18395843-18395871)
chr4 (32-60)||(23985768-23985796)
chr4 (32-60)||(24807418-24807446)
chr4 (32-60)||(52545310-52545338)
[»] chr1 (7 HSPs)
chr1 (32-60)||(3282795-3282823)
chr1 (32-60)||(3284496-3284524)
chr1 (32-60)||(5924983-5925011)
chr1 (32-60)||(9312023-9312051)
chr1 (32-60)||(37664764-37664792)
chr1 (32-60)||(37674486-37674514)
chr1 (32-60)||(37702180-37702208)


Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 17579249 - 17579572
Alignment:
Q  1 aaattgacactagagggaatcgaacccgaaactatcaactaactatagttgattattcatcttgtaataaaaatcttgtttagctacatatccgtagttt 100  Q
    ||||| |||||||||| |||| |||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  17579249 aaattaacactagaggaaatcaaacctgagactatcaactaactatagttgattattcatcttgtaataaaaaacttgtttagctacttatccgtagttt 17579348  T
Q  101 acctttggaaatacagaaattcctttcaagaagcaaatctgaggaatgattccatgtagtgtgtaagcaatagtatattgagttgtggttgtgaagtagc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  17579349 acctttggaaatacagaaattcctttcaagaagcaaatctgaggaatgattccataaagtgtgtaagcaatagtatattgagttgtggttgtgaagtagc 17579448  T
Q  201 aaaaggttagacagtgaataatgggcaatcttgaaatcccataagtgaatgggctatatttagagattccaagcaagcaaagttcagatgtccactttac 300  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17579449 aaaaggttagacaatgaataatgggcaatcttgaaatcccataagtgaatgggctatacttagagattccaagcaagcaaagttcagatgtccactttac 17579548  T
Q  301 caactgaagtgatccctctttcat 324  Q
    |||||||||  |||||||||||||    
T  17579549 caactgaaggtatccctctttcat 17579572  T

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Target: scaffold0011 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 89 - 299
Target Start/End: Complemental strand, 17512 - 17302
Alignment:
Q  89 tatccgtagtttacctttggaaatacagaaattcctttcaagaagcaaatctgaggaatgattccatgtagtgtgtaagcaatagtatattgagttgtgg 188  Q
    ||||| || |||||||||||| ||||||  ||||| |||||||||||||||||||||| || ||||| |||  | || ||  | | | |||| ||||||     
T  17512 tatccatattttacctttggatatacaggtattcccttcaagaagcaaatctgaggaacgaatccatataggatataggctgttgcaaattgggttgtgc 17413  T
Q  189 ttgtgaagtagcaaaaggttagacagtgaataatgggcaatcttgaaatcccataagtgaatgggctatatttagagattccaagcaagcaaagttcaga 288  Q
    ||   ||||| ||||| |||| ||| |||||| | |||||||||||||  |||||||||||||| ||||||||||||||| |||| ||  ||||||||||    
T  17412 ttactaagtaacaaaaagttaaacaatgaatagtaggcaatcttgaaaggccataagtgaatggactatatttagagattgcaagtaacaaaagttcaga 17313  T
Q  289 tgtccacttta 299  Q
    || ||| ||||    
T  17312 tgaccatttta 17302  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 299
Target Start/End: Original strand, 16381787 - 16381987
Alignment:
Q  99 ttacctttggaaatacagaaattcctttcaagaagcaaatctgaggaatgattccatgtagtgtgtaagcaatagtatattgagttgtggttgtgaagta 198  Q
    ||||||||||||||||||  ||||||| |||||||||||  |||||||  ||||||| ||| ||||| | || |  |||| | | |    |||  ||||     
T  16381787 ttacctttggaaatacaggtattccttgcaagaagcaaagttgaggaacaattccatatagggtgtatggaacaacatatagggctaaacttgacaagtg 16381886  T
Q  199 gcaaaaggttagacagtgaataatgggcaatcttgaaatcccataagtgaatgggctatatttagagattccaagcaagcaaagttcagatgtccacttt 298  Q
     |||||||||| ||| |||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||| |||  |||||||||||  |||||||    
T  16381887 acaaaaggttaaacaatgaacaataggcaatcttgaaatcccataagtgaatggactatatttagatattgcaaacaacaaaagttcagatacccacttt 16381986  T
Q  299 a 299  Q
    |    
T  16381987 a 16381987  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 37405659 - 37405700
Alignment:
Q  32 ctatcaactaactatagttgattattcatcttgtaataaaaa 73  Q
    |||||||||||||||||||||||||||||  | |||||||||    
T  37405659 ctatcaactaactatagttgattattcatactctaataaaaa 37405700  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 14935599 - 14935571
Alignment:
Q  32 ctatcaactaactatagttgattattcat 60  Q
    |||||||||||||||||||||||||||||    
T  14935599 ctatcaactaactatagttgattattcat 14935571  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 15866602 - 15866574
Alignment:
Q  32 ctatcaactaactatagttgattattcat 60  Q
    |||||||||||||||||||||||||||||    
T  15866602 ctatcaactaactatagttgattattcat 15866574  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 15868414 - 15868386
Alignment:
Q  32 ctatcaactaactatagttgattattcat 60  Q
    |||||||||||||||||||||||||||||    
T  15868414 ctatcaactaactatagttgattattcat 15868386  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 32079932 - 32079904
Alignment:
Q  32 ctatcaactaactatagttgattattcat 60  Q
    |||||||||||||||||||||||||||||    
T  32079932 ctatcaactaactatagttgattattcat 32079904  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 33869268 - 33869240
Alignment:
Q  32 ctatcaactaactatagttgattattcat 60  Q
    |||||||||||||||||||||||||||||    
T  33869268 ctatcaactaactatagttgattattcat 33869240  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 25076325 - 25076353
Alignment:
Q  32 ctatcaactaactatagttgattattcat 60  Q
    |||||||||||||||||||||||||||||    
T  25076325 ctatcaactaactatagttgattattcat 25076353  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 25134294 - 25134322
Alignment:
Q  32 ctatcaactaactatagttgattattcat 60  Q
    |||||||||||||||||||||||||||||    
T  25134294 ctatcaactaactatagttgattattcat 25134322  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 39787268 - 39787296
Alignment:
Q  32 ctatcaactaactatagttgattattcat 60  Q
    |||||||||||||||||||||||||||||    
T  39787268 ctatcaactaactatagttgattattcat 39787296  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 18395843 - 18395871
Alignment:
Q  32 ctatcaactaactatagttgattattcat 60  Q
    |||||||||||||||||||||||||||||    
T  18395843 ctatcaactaactatagttgattattcat 18395871  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 23985796 - 23985768
Alignment:
Q  32 ctatcaactaactatagttgattattcat 60  Q
    |||||||||||||||||||||||||||||    
T  23985796 ctatcaactaactatagttgattattcat 23985768  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 24807446 - 24807418
Alignment:
Q  32 ctatcaactaactatagttgattattcat 60  Q
    |||||||||||||||||||||||||||||    
T  24807446 ctatcaactaactatagttgattattcat 24807418  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 52545310 - 52545338
Alignment:
Q  32 ctatcaactaactatagttgattattcat 60  Q
    |||||||||||||||||||||||||||||    
T  52545310 ctatcaactaactatagttgattattcat 52545338  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 3282823 - 3282795
Alignment:
Q  32 ctatcaactaactatagttgattattcat 60  Q
    |||||||||||||||||||||||||||||    
T  3282823 ctatcaactaactatagttgattattcat 3282795  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 3284524 - 3284496
Alignment:
Q  32 ctatcaactaactatagttgattattcat 60  Q
    |||||||||||||||||||||||||||||    
T  3284524 ctatcaactaactatagttgattattcat 3284496  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 5924983 - 5925011
Alignment:
Q  32 ctatcaactaactatagttgattattcat 60  Q
    |||||||||||||||||||||||||||||    
T  5924983 ctatcaactaactatagttgattattcat 5925011  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 9312051 - 9312023
Alignment:
Q  32 ctatcaactaactatagttgattattcat 60  Q
    |||||||||||||||||||||||||||||    
T  9312051 ctatcaactaactatagttgattattcat 9312023  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 37664764 - 37664792
Alignment:
Q  32 ctatcaactaactatagttgattattcat 60  Q
    |||||||||||||||||||||||||||||    
T  37664764 ctatcaactaactatagttgattattcat 37664792  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 37674486 - 37674514
Alignment:
Q  32 ctatcaactaactatagttgattattcat 60  Q
    |||||||||||||||||||||||||||||    
T  37674486 ctatcaactaactatagttgattattcat 37674514  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 37702208 - 37702180
Alignment:
Q  32 ctatcaactaactatagttgattattcat 60  Q
    |||||||||||||||||||||||||||||    
T  37702208 ctatcaactaactatagttgattattcat 37702180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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