View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15635_high_4 (Length: 324)

Name: NF15635_high_4
Description: NF15635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15635_high_4
NF15635_high_4
[»] chr2 (4 HSPs)
chr2 (9-324)||(11524059-11524374)
chr2 (14-241)||(30197689-30197916)
chr2 (229-317)||(14150303-14150391)
chr2 (226-315)||(32835918-32836007)
[»] chr5 (4 HSPs)
chr5 (9-324)||(34673556-34673871)
chr5 (14-241)||(35899169-35899396)
chr5 (229-318)||(14489304-14489393)
chr5 (229-318)||(27039764-27039851)
[»] chr7 (3 HSPs)
chr7 (23-324)||(20463550-20463849)
chr7 (229-317)||(27804681-27804769)
chr7 (226-293)||(2274838-2274905)
[»] scaffold0002 (1 HSPs)
scaffold0002 (14-241)||(463524-463751)
[»] chr3 (9 HSPs)
chr3 (14-241)||(52052932-52053159)
chr3 (56-241)||(53572586-53572771)
chr3 (226-298)||(22522576-22522648)
chr3 (226-288)||(1538980-1539042)
chr3 (226-298)||(19792281-19792353)
chr3 (48-151)||(25422230-25422332)
chr3 (230-300)||(6032804-6032874)
chr3 (230-298)||(54332514-54332582)
chr3 (14-55)||(53572444-53572485)
[»] chr1 (9 HSPs)
chr1 (14-241)||(16993998-16994225)
chr1 (14-241)||(31356709-31356936)
chr1 (116-218)||(15333313-15333417)
chr1 (229-300)||(3215058-3215129)
chr1 (48-154)||(15333194-15333296)
chr1 (245-281)||(17371671-17371707)
chr1 (55-197)||(19477194-19477336)
chr1 (244-309)||(24427558-24427623)
chr1 (226-298)||(3158415-3158487)
[»] scaffold0169 (1 HSPs)
scaffold0169 (226-317)||(22719-22810)
[»] chr6 (3 HSPs)
chr6 (226-317)||(1512285-1512376)
chr6 (228-293)||(12200399-12200464)
chr6 (226-282)||(5477351-5477407)
[»] chr8 (5 HSPs)
chr8 (230-317)||(30273660-30273747)
chr8 (226-298)||(44587647-44587719)
chr8 (48-151)||(7175937-7176039)
chr8 (226-278)||(25939032-25939084)
chr8 (226-298)||(40796542-40796614)
[»] chr4 (1 HSPs)
chr4 (50-267)||(26622481-26622698)


Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 324
Target Start/End: Complemental strand, 11524374 - 11524059
Alignment:
Q  9 agcagagacgctacggtctagtcctatatgtgattcaagtataggtgaagctttgggtctgtcatatgttatccagtgggtacatgagctgcaactcact 108  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  11524374 agcaaagacgctacggtctagtcctatatgtgattcaagtataggtgaagctttgggtctgtcatatgctattcagtgggtacatgagctgcaactcact 11524275  T
Q  109 aatgtctattttgagatggatgccaaacgggttgtagattattacattaaaggaagcaatgatatatctgaatttggcgcaatcattgataattgtagac 208  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11524274 aatgtcgattttgagatggatgccaaacgggctgtagattattacattaaaggaagcaatgatatatctgaatttggcgcaatcattgatgattgtagac 11524175  T
Q  209 gtcgatgttgttcttggtttgaaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatactcttgctagagaagccatactcctagc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||| |    
T  11524174 gtcgatgttgttcttggtttgaaaactctaagattgagtttaataggagacaagcgaatatagtcgctcatactattgctagagaggccatactcctaac 11524075  T
Q  309 tagtccccaaaatttt 324  Q
    |||| |||||| ||||    
T  11524074 tagttcccaaactttt 11524059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 30197689 - 30197916
Alignment:
Q  14 agacgctacggtctagtcctatatgtgattcaagtataggtgaagctttgggtctgtcatatgttatccagtgggtacatgagctgcaactcactaatgt 113  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||||||| || ||||| | |||||| ||||||||||||||| |||||||||||||    
T  30197689 agacgctacggtctagtcctatatgtgaatcgggtataggtgaagctttgggcctctcatacgctatccaatgggtacatgagctgaaactcactaatgt 30197788  T
Q  114 ctattttgagatggatgccaaacgggttgtagattattacattaaaggaagcaatgatatatctgaatttggcgcaatcattgataattgtagacgtcga 213  Q
    | | |||||||||||||||||| |||||||||||||||||| ||| | |||||||||||||||||||||  |||||| ||||||| |||||||||||  |    
T  30197789 cgactttgagatggatgccaaaagggttgtagattattacaataaggtaagcaatgatatatctgaattcagcgcaaccattgatgattgtagacgttta 30197888  T
Q  214 tgttgttcttggtttgaaaactctaaga 241  Q
    ||||||| ||||||||||||||||||||    
T  30197889 tgttgttattggtttgaaaactctaaga 30197916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 317
Target Start/End: Complemental strand, 14150391 - 14150303
Alignment:
Q  229 gaaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatactcttgctagagaagccatactcctagctagtcccca 317  Q
    ||||||||||||  |||||| | | ||||||||||||||  |||||||||||||||||||| ||| |||||| ||  |||| |||||||    
T  14150391 gaaaactctaaggatgagttcagtcggagacaagcgaatgaggtcgctcatactcttgctaaagaggccatattctcagctggtcccca 14150303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 315
Target Start/End: Complemental strand, 32836007 - 32835918
Alignment:
Q  226 tttgaaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatactcttgctagagaagccatactcctagctagtccc 315  Q
    ||||||||||||||| ||||||||| | |||||||| |||||  ||| ||||||| ||||||  |||| ||||   ||||||||||||||    
T  32836007 tttgaaaactctaaggttgagtttagtcggagacaaacgaatgaggtagctcataatcttgcacgagaggccactttcctagctagtccc 32835918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 324
Target Start/End: Original strand, 34673556 - 34673871
Alignment:
Q  9 agcagagacgctacggtctagtcctatatgtgattcaagtataggtgaagctttgggtctgtcatatgttatccagtgggtacatgagctgcaactcact 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  34673556 agcaaagacgctacggtctagtcctatatgtgattcaagtataggtgaagctttgggcctgtcatatgctatccaatgggtacatgagctgcaactcact 34673655  T
Q  109 aatgtctattttgagatggatgccaaacgggttgtagattattacattaaaggaagcaatgatatatctgaatttggcgcaatcattgataattgtagac 208  Q
    || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34673656 aacgtcgattttgagatggatgccaaacgggttgtagattattacattaaaggaagcaatgatatatctgaatttggcgcaatcattgatgattgtagac 34673755  T
Q  209 gtcgatgttgttcttggtttgaaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatactcttgctagagaagccatactcctagc 308  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||  |||||||||||| |||||  |||||||||||||    
T  34673756 gtcgatgttgttattggtttgaaaactctaaggttgagtttaataggaaacaagcgaatatggtcattcatactcttgcaagagagaccatactcctagc 34673855  T
Q  309 tagtccccaaaatttt 324  Q
    ||||||||||| ||||    
T  34673856 tagtccccaaactttt 34673871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 35899396 - 35899169
Alignment:
Q  14 agacgctacggtctagtcctatatgtgattcaagtataggtgaagctttgggtctgtcatatgttatccagtgggtacatgagctgcaactcactaatgt 113  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||||||| || ||||| | |||||| ||||||||||||||| |||||||||||||    
T  35899396 agacgctacggtctagtcctatatgtgaatcgggtataggtgaagctttgggcctctcatacgctatccaatgggtacatgagctgaaactcactaatgt 35899297  T
Q  114 ctattttgagatggatgccaaacgggttgtagattattacattaaaggaagcaatgatatatctgaatttggcgcaatcattgataattgtagacgtcga 213  Q
    | | |||||||||||||||||| |||||||||||||||||| ||| | |||||||||||||||||||||  |||||| ||||||| ||||||||||||||    
T  35899296 cgactttgagatggatgccaaaagggttgtagattattacaataaggtaagcaatgatatatctgaattcagcgcaaccattgatgattgtagacgtcga 35899197  T
Q  214 tgttgttcttggtttgaaaactctaaga 241  Q
    ||||||| ||||||||||||||||||||    
T  35899196 tgttgttattggtttgaaaactctaaga 35899169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 229 - 318
Target Start/End: Complemental strand, 14489393 - 14489304
Alignment:
Q  229 gaaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatactcttgctagagaagccatactcctagctagtccccaa 318  Q
    |||||||||||| |  |||||| | ||||||||||||||  |||||||||||||||||||||||| ||  || || ||||||||||||||    
T  14489393 gaaaactctaaggtgaagtttagtcggagacaagcgaatgaggtcgctcatactcttgctagagaggctttattcttagctagtccccaa 14489304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 318
Target Start/End: Complemental strand, 27039851 - 27039764
Alignment:
Q  229 gaaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatactcttgctagagaagccatactcctagctagtccccaa 318  Q
    |||||||||||| | ||||||||  |||||| |||||||  |||||||||||||||||||||||| ||  || || || |||||||||||    
T  27039851 gaaaactctaaggtggagtttaa--ggagacgagcgaatgaggtcgctcatactcttgctagagaggctttattcttatctagtccccaa 27039764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 23 - 324
Target Start/End: Complemental strand, 20463849 - 20463550
Alignment:
Q  23 ggtctagtcctatatgtgattcaagtataggtgaagctttgggtctgtcatatgttatccagtgggtacatgagctgcaactcactaatgtctattttga 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||    
T  20463849 ggtctagtcctatatgtgattcaagtataggtgaagctttgggtctgtcatatgctatccagtgggtacatgagctgcaactcactaatgttgattttga 20463750  T
Q  123 gatggatgccaaacgggttgtagattattacattaaaggaagcaatgatatatctgaatttggcgcaatcattgataattgtagacgtcgatgttgttct 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||| |||||||||    
T  20463749 gatggatgccaaacgggttgtagattattacattaaaggaagcaatgatatatctgaatttggcacaatcattgaggattgtagacgtcggtgttgttct 20463650  T
Q  223 tggtttgaaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatactcttgctagagaagccatactcctagctagtccccaaaatt 322  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| |||||  |||||| |||||||||||||||||| ||    
T  20463649 tggtttgaaaactctaaggttgagtttaataggagacaagcgagtatggtcgctcatattcttggtagag--gccataatcctagctagtccccaaattt 20463552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 317
Target Start/End: Complemental strand, 27804769 - 27804681
Alignment:
Q  229 gaaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatactcttgctagagaagccatactcctagctagtcccca 317  Q
    |||||||||||| | ||||| | | ||| ||||||||||  |||||||||||||||||||||||| |||||| ||  |||| |||||||    
T  27804769 gaaaactctaaggtggagttcagtcggaaacaagcgaatgaggtcgctcatactcttgctagagaggccatattctcagctggtcccca 27804681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 293
Target Start/End: Complemental strand, 2274905 - 2274838
Alignment:
Q  226 tttgaaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatactcttgctagaga 293  Q
    |||||||||| |||| |  |||||| | |||||||||||||| |||||||||||| ||||||| ||||    
T  2274905 tttgaaaactttaaggtgaagtttagtcggagacaagcgaatgtggtcgctcatattcttgctcgaga 2274838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 463524 - 463751
Alignment:
Q  14 agacgctacggtctagtcctatatgtgattcaagtataggtgaagctttgggtctgtcatatgttatccagtgggtacatgagctgcaactcactaatgt 113  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||||||| || ||||| | |||||| ||||||||||||||| |||||||||||||    
T  463524 agacgctacggtctagtcctatatgtgaatcgggtataggtgaagctttgggcctctcatacgctatccaatgggtacatgagctgaaactcactaatgt 463623  T
Q  114 ctattttgagatggatgccaaacgggttgtagattattacattaaaggaagcaatgatatatctgaatttggcgcaatcattgataattgtagacgtcga 213  Q
    | | |||||||||||||||||| |||||||||||||||||| ||| | |||||||||||||||||||||  |||||| ||||||| ||||||||||||||    
T  463624 cgactttgagatggatgccaaaagggttgtagattattacaataaggtaagcaatgatatatctgaattcagcgcaaccattgatgattgtagacgtcga 463723  T
Q  214 tgttgttcttggtttgaaaactctaaga 241  Q
    ||||||| ||||||||||||||||||||    
T  463724 tgttgttattggtttgaaaactctaaga 463751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 52052932 - 52053159
Alignment:
Q  14 agacgctacggtctagtcctatatgtgattcaagtataggtgaagctttgggtctgtcatatgttatccagtgggtacatgagctgcaactcactaatgt 113  Q
    |||||||||||||| ||||||||||||| ||  ||||||||||||||||||| || ||||| | |||||| ||||||||||||||| |||||||||||||    
T  52052932 agacgctacggtctggtcctatatgtgaatcgggtataggtgaagctttgggcctctcatacgctatccaatgggtacatgagctgaaactcactaatgt 52053031  T
Q  114 ctattttgagatggatgccaaacgggttgtagattattacattaaaggaagcaatgatatatctgaatttggcgcaatcattgataattgtagacgtcga 213  Q
    | | |||||||||||||||||| |||||||||||||||||| ||| | |||||||||||||||||||||  |||||| ||||||| ||||||||||||||    
T  52053032 cgactttgagatggatgccaaaagggttgtagattattacaataaggtaagcaatgatatatctgaattcagcgcaaccattgatgattgtagacgtcga 52053131  T
Q  214 tgttgttcttggtttgaaaactctaaga 241  Q
    ||||||| ||||||||||||||||||||    
T  52053132 tgttgttattggtttgaaaactctaaga 52053159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 56 - 241
Target Start/End: Original strand, 53572586 - 53572771
Alignment:
Q  56 aagctttgggtctgtcatatgttatccagtgggtacatgagctgcaactcactaatgtctattttgagatggatgccaaacgggttgtagattattacat 155  Q
    |||||||||| || ||||| | |||||| ||||||||||||||| |||||||||||||| | |||||||||||||||||| ||||||||||||||||||     
T  53572586 aagctttgggcctctcatacgctatccaatgggtacatgagctgaaactcactaatgtcgactttgagatggatgccaaaagggttgtagattattacaa 53572685  T
Q  156 taaaggaagcaatgatatatctgaatttggcgcaatcattgataattgtagacgtcgatgttgttcttggtttgaaaactctaaga 241  Q
    ||| | |||||||||||||||||||||  |||||| ||||||| |||||||||||  |||||||| ||||||||||||||||||||    
T  53572686 taaggtaagcaatgatatatctgaattcagcgcaaccattgatgattgtagacgtttatgttgttattggtttgaaaactctaaga 53572771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 226 - 298
Target Start/End: Complemental strand, 22522648 - 22522576
Alignment:
Q  226 tttgaaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatactcttgctagagaagcca 298  Q
    ||||||||||||||| | ||||||| | |||||||||||||| |||||||||||||||||||| |||||||||    
T  22522648 tttgaaaactctaaggtggagtttagtcggagacaagcgaatgtggtcgctcatactcttgctcgagaagcca 22522576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 226 - 288
Target Start/End: Complemental strand, 1539042 - 1538980
Alignment:
Q  226 tttgaaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatactcttgct 288  Q
    ||||||||||||||| | ||||||| | |||||||||||||||||||||||||||||||||||    
T  1539042 tttgaaaactctaaggtggagtttagtcggagacaagcgaatatggtcgctcatactcttgct 1538980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 298
Target Start/End: Original strand, 19792281 - 19792353
Alignment:
Q  226 tttgaaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatactcttgctagagaagcca 298  Q
    ||||||||||||||| | ||||||||| |||||||||| ||| |||| |||||||| ||||||||||| ||||    
T  19792281 tttgaaaactctaaggtggagtttaatcggagacaagcaaatgtggttgctcatacacttgctagagaggcca 19792353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 151
Target Start/End: Complemental strand, 25422332 - 25422230
Alignment:
Q  48 tataggtgaagctttgggtctgtcatatgttatccagtgggtacatgagctgcaactcactaatgtctattttgagatggatgccaaacgggttgtagat 147  Q
    ||||||||||||||||||||||||| | | |||||||||||| ||||| || |||||| | || ||| |||| ||| ||||||||||  ||||||||||     
T  25422332 tataggtgaagctttgggtctgtcacaagctatccagtgggttcatgatctacaactc-ccaaagtcgatttcgagttggatgccaagagggttgtagac 25422234  T
Q  148 tatt 151  Q
    ||||    
T  25422233 tatt 25422230  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 6032874 - 6032804
Alignment:
Q  230 aaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatactcttgctagagaagccata 300  Q
    ||||||||||| | | ||||| | |||||||||||||| |||||||||||||||||||| |||| ||||||    
T  6032874 aaaactctaaggtggtgtttagtcggagacaagcgaatgtggtcgctcatactcttgctcgagaggccata 6032804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 54332582 - 54332514
Alignment:
Q  230 aaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatactcttgctagagaagcca 298  Q
    ||||||||||| | ||||||| | |||||||| ||||| |||||||||||||||||||| |||| ||||    
T  54332582 aaaactctaaggtggagtttagtcggagacaaacgaatgtggtcgctcatactcttgctcgagaggcca 54332514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 53572444 - 53572485
Alignment:
Q  14 agacgctacggtctagtcctatatgtgattcaagtataggtg 55  Q
    |||||||||||||||||||||||||||| ||  |||||||||    
T  53572444 agacgctacggtctagtcctatatgtgaatcgggtataggtg 53572485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 16994225 - 16993998
Alignment:
Q  14 agacgctacggtctagtcctatatgtgattcaagtataggtgaagctttgggtctgtcatatgttatccagtgggtacatgagctgcaactcactaatgt 113  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||||||| || |||||   |||||| ||||||||||||||| |||||||||||||    
T  16994225 agacgctacggtctagtcctatatgtgaatcgggtataggtgaagctttgggcctctcatacactatccaatgggtacatgagctgaaactcactaatgt 16994126  T
Q  114 ctattttgagatggatgccaaacgggttgtagattattacattaaaggaagcaatgatatatctgaatttggcgcaatcattgataattgtagacgtcga 213  Q
    | | |||||||||||||||||| |||||||||||||||||| ||| | |||||||||||||||||||||  |||||| ||||||| ||||||||||||||    
T  16994125 cgactttgagatggatgccaaaagggttgtagattattacaataaggtaagcaatgatatatctgaattcagcgcaaccattgatgattgtagacgtcga 16994026  T
Q  214 tgttgttcttggtttgaaaactctaaga 241  Q
    ||||||| ||||||||||||||||||||    
T  16994025 tgttgttattggtttgaaaactctaaga 16993998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 31356936 - 31356709
Alignment:
Q  14 agacgctacggtctagtcctatatgtgattcaagtataggtgaagctttgggtctgtcatatgttatccagtgggtacatgagctgcaactcactaatgt 113  Q
    |||||||||||||| ||||||||||||| ||  ||||||||||||||||||| || ||||| | |||||| ||||||||||||||| |||||||||||||    
T  31356936 agacgctacggtctggtcctatatgtgaatcgggtataggtgaagctttgggcctctcatacgctatccaatgggtacatgagctgaaactcactaatgt 31356837  T
Q  114 ctattttgagatggatgccaaacgggttgtagattattacattaaaggaagcaatgatatatctgaatttggcgcaatcattgataattgtagacgtcga 213  Q
    | | |||||||||||||||||| |||||||||||||||||| ||| | |||||||||||||||||||||  |||||| ||||||| ||||||||||||||    
T  31356836 cgactttgagatggatgccaaaagggttgtagattattacaataaggtaagcaatgatatatctgaattcagcgcaaccattgatgattgtagacgtcga 31356737  T
Q  214 tgttgttcttggtttgaaaactctaaga 241  Q
    ||||||| ||||||||||||||||||||    
T  31356736 tgttgttattggtttgaaaactctaaga 31356709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 116 - 218
Target Start/End: Original strand, 15333313 - 15333417
Alignment:
Q  116 attttgagatggatgccaaacgggttgtagattattacattaaaggaagcaatgatatatctgaatttggcg--caatcattgataattgtagacgtcga 213  Q
    |||||||| ||||||||||| || ||||||||||||||| |||  ||||||||||||| |  ||||| ||||  ||||| ||||| |||||||||| |||    
T  15333313 attttgagttggatgccaaaaggattgtagattattacaataagagaagcaatgatattttcgaattcggcgcccaatcgttgatgattgtagacgacga 15333412  T
Q  214 tgttg 218  Q
    |||||    
T  15333413 tgttg 15333417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 300
Target Start/End: Original strand, 3215058 - 3215129
Alignment:
Q  229 gaaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatactcttgctagagaagccata 300  Q
    |||||||||||| | ||||| | ||||||||||||||||  |||||||||||||||||||| ||| ||||||    
T  3215058 gaaaactctaaggtggagttcagtaggagacaagcgaatgaggtcgctcatactcttgctacagaggccata 3215129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 15333194 - 15333296
Alignment:
Q  48 tataggtgaagctttgggtctgtcatatgttatccagtgggtacatgagctgcaactcactaatgtctattttgagatggatgccaaacgggttgtagat 147  Q
    ||||||||||||||||||||| ||| ||  |||| | ||| ||||| |||| |||||||||| |||  |||||||    | ||||||| |||||||||||    
T  15333194 tataggtgaagctttgggtctctcaaatactatctaatggatacataagctacaactcactattgttgattttga----gctgccaaaagggttgtagat 15333289  T
Q  148 tattaca 154  Q
    |||||||    
T  15333290 tattaca 15333296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 17371671 - 17371707
Alignment:
Q  245 agtttaataggagacaagcgaatatggtcgctcatac 281  Q
    |||||| ||||||||||||||||||||||||||||||    
T  17371671 agtttattaggagacaagcgaatatggtcgctcatac 17371707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 197
Target Start/End: Original strand, 19477194 - 19477336
Alignment:
Q  55 gaagctttgggtctgtcatatgttatccagtgggtacatgagctgcaactcactaatgtctattttgagatggatgccaaacgggttgtagattattaca 154  Q
    ||||||||||| || ||||| |  ||||  ||||| ||||| |||||||||| ||||||  |||||||  ||||||||||   ||||||||||||||  |    
T  19477194 gaagctttgggactttcatacgccatccgttgggtgcatgaactgcaactcaataatgttgattttgaattggatgccaagacggttgtagattatttta 19477293  T
Q  155 ttaaaggaagcaatgatatatctgaatttggcgcaatcattga 197  Q
     |  |||  ||||||||||||| || ||||| ||||| |||||    
T  19477294 attgaggttgcaatgatatatccgagtttggagcaataattga 19477336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 24427623 - 24427558
Alignment:
Q  244 gagtttaataggagacaagcgaatatggtcgctcatactcttgctagagaagccatactcctagct 309  Q
    ||||||| |||| ||||||| |||  |||||||||||||||||| |||||| ||| | ||||||||    
T  24427623 gagtttattaggcgacaagccaatgaggtcgctcatactcttgcaagagaaaccacattcctagct 24427558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 298
Target Start/End: Complemental strand, 3158487 - 3158415
Alignment:
Q  226 tttgaaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatactcttgctagagaagcca 298  Q
    ||||||||||||||| | ||||||| | |||||||||||| |   ||| |||||||||||||| |||| ||||    
T  3158487 tttgaaaactctaaggtagagtttagtcggagacaagcgagtgaagtcactcatactcttgctcgagaggcca 3158415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 317
Target Start/End: Complemental strand, 22810 - 22719
Alignment:
Q  226 tttgaaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatactcttgctagagaagccatactcctagctagtcccca 317  Q
    ||||||||||||||| |  |||||| | |||||||||||||| |||||||||||||||||||| ||||  ||||   |||||||||||||||    
T  22810 tttgaaaactctaaggtgaagtttagtcggagacaagcgaatgtggtcgctcatactcttgctcgagagaccatttccctagctagtcccca 22719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 317
Target Start/End: Original strand, 1512285 - 1512376
Alignment:
Q  226 tttgaaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatactcttgctagagaagccatactcctagctagtcccca 317  Q
    |||||||| |||||| | ||||||| | |||||||||||||| |||||||||||||||||||| |||| | |||   |||||||||||||||    
T  1512285 tttgaaaattctaaggtggagtttagtcggagacaagcgaatgtggtcgctcatactcttgctcgagaggtcatttccctagctagtcccca 1512376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 12200464 - 12200399
Alignment:
Q  228 tgaaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatactcttgctagaga 293  Q
    |||||||| |||||| ||||||| | ||||||||||||||  ||||||||||||||||||||||||    
T  12200464 tgaaaactttaagatggagtttagttggagacaagcgaatgaggtcgctcatactcttgctagaga 12200399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 5477407 - 5477351
Alignment:
Q  226 tttgaaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatact 282  Q
    ||||||||||||||| | ||||||| | ||||||||||||||  |||| ||||||||    
T  5477407 tttgaaaactctaaggtggagtttagtcggagacaagcgaatgaggtcactcatact 5477351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 30273747 - 30273660
Alignment:
Q  230 aaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatactcttgctagagaagccatactcctagctagtcccca 317  Q
    ||||| ||||| | ||||||| | ||||||||||||||   ||||||||||||||||||||||||||| ||||| || || |||||||    
T  30273747 aaaacactaaggtggagtttagtcggagacaagcgaatgaagtcgctcatactcttgctagagaagccttactcttaactggtcccca 30273660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 298
Target Start/End: Original strand, 44587647 - 44587719
Alignment:
Q  226 tttgaaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatactcttgctagagaagcca 298  Q
    ||||||||||||||| | ||||||| | |||||||| ||||| |||| |||||| ||||||||  ||||||||    
T  44587647 tttgaaaactctaaggtggagtttagtcggagacaatcgaatgtggttgctcatgctcttgctcaagaagcca 44587719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 7175937 - 7176039
Alignment:
Q  48 tataggtgaagctttgggtctgtcatatgttatccagtgggtacatgagctgcaactcactaatgtctattttgagatggatgccaaacgggttgtagat 147  Q
    ||||||||||||||||| ||||||| | | |||||||||||| ||||| || |||||| | |||||| |||| ||| |||||| |||  | ||||||||     
T  7175937 tataggtgaagctttgg-tctgtcacaagctatccagtgggttcatgatctacaactcccaaatgtcaatttcgagttggatgtcaagagagttgtagac 7176035  T
Q  148 tatt 151  Q
    ||||    
T  7176036 tatt 7176039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 25939032 - 25939084
Alignment:
Q  226 tttgaaaactctaagattgagtttaataggagacaagcgaatatggtcgctca 278  Q
    ||||||||||||||| | ||||||| | ||||||||||||||  |||||||||    
T  25939032 tttgaaaactctaaggtagagtttagtcggagacaagcgaatgaggtcgctca 25939084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 298
Target Start/End: Original strand, 40796542 - 40796614
Alignment:
Q  226 tttgaaaactctaagattgagtttaataggagacaagcgaatatggtcgctcatactcttgctagagaagcca 298  Q
    |||||||||| |||| |  |||||||| ||| |||||| ||| |||| |||||||| ||||||||||| ||||    
T  40796542 tttgaaaactttaaggtgaagtttaatcggaaacaagcaaatgtggttgctcatacacttgctagagatgcca 40796614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 267
Target Start/End: Original strand, 26622481 - 26622698
Alignment:
Q  50 taggtgaagctttgggtctgtcatatgttatccagtgggtacatgagctgcaactcactaatgtctattttgagatggatgccaaacgggttgtagatta 149  Q
    |||||||||||| |||| ||||| | | |||||||||||| |||||||| |||||| | |||||| |||| ||| |||| |||||  | ||||||||  |    
T  26622481 taggtgaagcttagggtttgtcacaagctatccagtgggttcatgagctacaactcccaaatgtcgatttcgagttggaagccaagagagttgtagacca 26622580  T
Q  150 ttacattaaaggaagcaatgatatatctgaatttggcgcaatcattgataattgtagacgtcgatgttgttcttggtttgaaaactctaagattgagttt 249  Q
    || ||  | ||| | ||||||||| || |||||||| |  || |||||| |||||||    || |||  |||||  |||  |||||||||| | ||||||    
T  26622581 tttcaacataggtaacaatgatatctcagaatttggagtcattattgatgattgtaggaagcggtgtaattcttattttagaaactctaaggtagagttt 26622680  T
Q  250 aataggagacaagcgaat 267  Q
      ||||||||||||||||    
T  26622681 tgtaggagacaagcgaat 26622698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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