View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15635_high_5 (Length: 317)
Name: NF15635_high_5
Description: NF15635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15635_high_5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 202 - 317
Target Start/End: Complemental strand, 53679605 - 53679490
Alignment:
| Q |
202 |
acctgcttaatcaacattgagtcaccattcttactttcgtttgattttcatgaaaatccatccatttagatcagaaatagaacctaattgaattgatttt |
301 |
Q |
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| T |
53679605 |
acctgcttaatcaacaccgaatcacctttcttactttcgtttgattttcttgaaaatccatccatttagatcagaaatagaacctaattgaattgatttt |
53679506 |
T |
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| Q |
302 |
acatgcttaatcaact |
317 |
Q |
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| T |
53679505 |
acatgcttaatcaact |
53679490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 53679794 - 53679678
Alignment:
| Q |
13 |
gaacctgtgtgcatagatcttcttccctttcttctcttccatgtaaatccaaaaaccattcatccaacaatcttcacatatttctacttttcatgaaatc |
112 |
Q |
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| T |
53679794 |
gaacctgtgtgtatagatcttcttccctttcttctcttccatgtaaatccaaataccattcatttaacaatcttcacttatttctacttttcatgaaatc |
53679695 |
T |
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| Q |
113 |
atcattctcaatctccc |
129 |
Q |
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| T |
53679694 |
gtcattctcaatctccc |
53679678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 19266156 - 19266212
Alignment:
| Q |
28 |
gatcttcttccctttcttctcttccatgtaaatccaaaaaccattcatccaacaatc |
84 |
Q |
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| T |
19266156 |
gatcttcttccttttcttctcttctctgtaaatccaaattccattcattcaacaatc |
19266212 |
T |
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