View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15635_high_6 (Length: 307)

Name: NF15635_high_6
Description: NF15635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15635_high_6
NF15635_high_6
[»] chr2 (1 HSPs)
chr2 (1-299)||(20694103-20694401)
[»] chr3 (13 HSPs)
chr3 (210-299)||(9494819-9494908)
chr3 (202-299)||(41985644-41985741)
chr3 (193-298)||(9695610-9695715)
chr3 (202-292)||(41980877-41980967)
chr3 (202-299)||(9448330-9448427)
chr3 (217-298)||(9655375-9655456)
chr3 (202-278)||(9485972-9486048)
chr3 (212-299)||(9352917-9353004)
chr3 (204-299)||(9617468-9617563)
chr3 (217-274)||(9626498-9626555)
chr3 (217-298)||(9646382-9646463)
chr3 (202-278)||(13864241-13864317)
chr3 (258-299)||(9336556-9336597)
[»] chr1 (3 HSPs)
chr1 (204-298)||(4428648-4428742)
chr1 (186-299)||(4439876-4439989)
chr1 (259-299)||(18991220-18991260)
[»] chr6 (6 HSPs)
chr6 (217-297)||(7041514-7041594)
chr6 (184-278)||(7012857-7012951)
chr6 (212-278)||(7029850-7029916)
chr6 (212-278)||(7025793-7025859)
chr6 (212-278)||(9170854-9170920)
chr6 (222-278)||(9159518-9159574)
[»] chr8 (1 HSPs)
chr8 (202-238)||(13170687-13170723)


Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 20694103 - 20694401
Alignment:
Q  1 aaccttatgtggtcgacaaagttggccggacaattacatttggaccggatgacttgactgttcagttagtggccgaaccttttgtcgatggtgctggtgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20694103 aaccttatgtggtcgacaaagttggccggacaattacatttgaaccggatgacttgactgttcagttagtggccgaaccttttgtcgatggtgctggtgg 20694202  T
Q  101 gagagtaaaatttttggtggaaaatgagggtggtttgttgctagtggatatttatgagatttgtttgtcctattacctcgatgaagatgctttaagaatt 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20694203 gagagtaaaatttttggtggaaaatgagggtgatttgttgctagtggatatttatgagatttgtttgtcctattacctcgatgaagatgctttaagaatt 20694302  T
Q  201 tatgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttctctgct 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20694303 tatgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttttctgct 20694401  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 210 - 299
Target Start/End: Original strand, 9494819 - 9494908
Alignment:
Q  210 aggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttctctgct 299  Q
    ||||||||||| ||||||| || |||||||| |||||  ||||| ||||||||||||||||| |||||||||||||||||||| ||||||    
T  9494819 aggcttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgct 9494908  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 202 - 299
Target Start/End: Complemental strand, 41985741 - 41985644
Alignment:
Q  202 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttctctgct 299  Q
    |||||||||| |||||||| ||||||||||||||||| |  ||| | ||||| |||||||| |||||||| |||||||||||||||||||| ||||||    
T  41985741 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgct 41985644  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 298
Target Start/End: Original strand, 9695610 - 9695715
Alignment:
Q  193 taagaatttatgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgtt 292  Q
    |||| ||| |||| |||||||||||||| ||||||||||| ||||| |  ||||| | ||| |||||||||||||||||||||||| | |  ||||||||    
T  9695610 taagtattgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgtt 9695709  T
Q  293 ctctgc 298  Q
    ||||||    
T  9695710 ctctgc 9695715  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 292
Target Start/End: Complemental strand, 41980967 - 41980877
Alignment:
Q  202 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgtt 292  Q
    ||||||| ||||||| | | || |||||||||||||| |  ||||| ||||| |||||||| |||||||| ||||||||||||||||||||    
T  41980967 atgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgtt 41980877  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 202 - 299
Target Start/End: Complemental strand, 9448427 - 9448330
Alignment:
Q  202 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttctctgct 299  Q
    ||||||| | |||| |||| |||||||||||||||||||  || |||| ||| |||||||| |||||||| ||||||||||  |||||||| ||||||    
T  9448427 atgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttttctgct 9448330  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 298
Target Start/End: Original strand, 9655375 - 9655456
Alignment:
Q  217 atgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttctctgc 298  Q
    |||| |||||||||||||||||||  ||||  | ||| |||||||||||||||||||||||  | ||||||||||| |||||    
T  9655375 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgttttctgc 9655456  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 9485972 - 9486048
Alignment:
Q  202 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttgggg 278  Q
    ||||||| ||||||||||| ||||||||||| ||||||    ||| || ||||||||||| ||||||||||||||||    
T  9485972 atgtgtttaggcttgatgagaaggagaagaagtgggtggaggtgagaaatttgggggatatggttttgtttttgggg 9486048  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 299
Target Start/End: Complemental strand, 9353004 - 9352917
Alignment:
Q  212 gcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttctctgct 299  Q
    ||||||||| | ||||||||| |||||||  |||| ||  || |||| ||||||||||||| |||||| |||||||||||| ||||||    
T  9353004 gcttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttctgct 9352917  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 299
Target Start/End: Original strand, 9617468 - 9617563
Alignment:
Q  204 gtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttctctgct 299  Q
    ||||||||| || |||| || ||||||||||||||||  |||| || ||| |||||||||||||||||  | | |||||||||||| || ||||||    
T  9617468 gtgttcaggtttcatgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctgct 9617563  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 9626498 - 9626555
Alignment:
Q  217 atgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgttttt 274  Q
    |||| ||||||||||||||||||| |||||  | ||| ||||||||||||||||||||    
T  9626498 atgagaaggagaagaaatgggtgaatttgatgaatttaggggatagggttttgttttt 9626555  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 298
Target Start/End: Original strand, 9646382 - 9646463
Alignment:
Q  217 atgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttctctgc 298  Q
    |||| |||||||||||||||||||  ||||  | ||| |||||||||||||||||||| ||  | ||||||||||| |||||    
T  9646382 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgttttttggcgaaggatgttcgttttctgc 9646463  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 13864317 - 13864241
Alignment:
Q  202 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttgggg 278  Q
    ||||||| ||||||||||| | |||||| || ||||||    ||| || ||||||||||||||||||||||||||||    
T  13864317 atgtgtttaggcttgatgagagggagaaaaagtgggtggaggtgagaaatttgggggatagggttttgtttttgggg 13864241  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 9336597 - 9336556
Alignment:
Q  258 gatagggttttgtttttggggaatggatgttcgttctctgct 299  Q
    |||| ||||||||| |||||||||||||||||||| ||||||    
T  9336597 gataaggttttgttcttggggaatggatgttcgttttctgct 9336556  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 204 - 298
Target Start/End: Complemental strand, 4428742 - 4428648
Alignment:
Q  204 gtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttctctgc 298  Q
    ||||| ||||||||||| |||| |   ||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  4428742 gtgtttaggcttgatgagaaggcgcgtaaatgggtgaaattgacgagtttgggggatagggttttgtttttggggaatggatgtttgttttctgc 4428648  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 186 - 299
Target Start/End: Complemental strand, 4439989 - 4439876
Alignment:
Q  186 gatgctttaagaatttatgtgttcaggcttgatgaaaaggagaagaaatggg-tgagtttgacaagtttgggggatagggttttgtttttggggaatgga 284  Q
    |||| |||||| ||| ||||||| ||| ||||||| ||||||   ||||||| ||| |||||  |||||||| |||||||||||||||||||||||||||    
T  4439989 gatgttttaaggattaatgtgtttaggtttgatgagaaggagtgtaaatgggctga-tttgatgagtttgggagatagggttttgtttttggggaatgga 4439891  T
Q  285 tgttcgttctctgct 299  Q
    |||||||| ||||||    
T  4439890 tgttcgttttctgct 4439876  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 18991260 - 18991220
Alignment:
Q  259 atagggttttgtttttggggaatggatgttcgttctctgct 299  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  18991260 atagggttttgttcttggggaatggatgttcgttttctgct 18991220  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 297
Target Start/End: Complemental strand, 7041594 - 7041514
Alignment:
Q  217 atgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttctctg 297  Q
    |||| ||||||||||| |||||||  ||||| ||||| ||||||||||||||||| |||||  | | ||||||||||||||    
T  7041594 atgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctg 7041514  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 278
Target Start/End: Complemental strand, 7012951 - 7012857
Alignment:
Q  184 aagatgctttaagaatttatgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttgggg 278  Q
    ||||| || |||||||| || |||| | |||| |||| ||||||||||| |||||||  ||||||||||| || |||||| ||||||| ||||||    
T  7012951 aagatcctgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 7012857  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 7029916 - 7029850
Alignment:
Q  212 gcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttgggg 278  Q
    |||| |||| ||||||||||| |||||||  ||||| ||||| ||||||||||||||||| ||||||    
T  7029916 gcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttgggg 7029850  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 7025859 - 7025793
Alignment:
Q  212 gcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttgggg 278  Q
    |||| |||| ||||||||||| |||||||  ||||| ||||| || |||||||||||||| ||||||    
T  7025859 gcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttgggg 7025793  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 9170920 - 9170854
Alignment:
Q  212 gcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttgggg 278  Q
    |||| |||| ||||||||||| |||||||  || || ||||| ||||||||||||||||| ||||||    
T  9170920 gcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9170854  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 9159518 - 9159574
Alignment:
Q  222 aaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttgggg 278  Q
    ||||||||||| |||||||  || || ||||| ||||||||||||||||| ||||||    
T  9159518 aaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9159574  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 13170687 - 13170723
Alignment:
Q  202 atgtgttcaggcttgatgaaaaggagaagaaatgggt 238  Q
    |||||||||| ||||||||||||||||||||||||||    
T  13170687 atgtgttcagacttgatgaaaaggagaagaaatgggt 13170723  T

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