View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15636_high_1 (Length: 426)
Name: NF15636_high_1
Description: NF15636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15636_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 16843188 - 16842774
Alignment:
| Q |
1 |
tgtacgtgtagagatcagaagcataatttgattccttcatcattttcagtacagatctaaacgcgtccatttggctatcttttccataagcatccagcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16843188 |
tgtacgtgtagagatcagaagcataatttgattccttcatcattttcagtacagatctaaacgcgtccatttggctatcttttccataagcatccagcat |
16843089 |
T |
|
| Q |
101 |
tgaattgtaggcttcaagggaaactgagaatacatcaaattgcatcttgtgaacagttcttgacatgtcgctgaagtccttccttttcccataagcatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16843088 |
tgaattgtaggcttcaagggaaactgagaatacatcaaattgcatcttgtgaacagttcttgacatgtcgctgaagtccttccttttcccataagcatct |
16842989 |
T |
|
| Q |
201 |
ataatagtattgtaggtaatgacatcaaccaagccttgtttcttaggcataaaatacaacctccgcacaacaatgctatatgcaatcacatccaacgaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16842988 |
ataatagtattgtaggtaatgacatcaaccaagccttgtttcttaggcataaaatacaacctccgcacaacaatgctatatgcaatcacatccaacgaat |
16842889 |
T |
|
| Q |
301 |
ttggtgaagaagacatcttcaactttagatgtaacatctcattgcgtctacagaagcgtcccataacactataaatatcgatccttgtacaaacaatgtg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16842888 |
ttggtgaagaagacatcttcaactttagatgtaacatctc--tgcatct-ttgaagcgtcccataacactataaatatcgatccttgtacaaacaatgtg |
16842792 |
T |
|
| Q |
401 |
cttgttcagcttcatctc |
418 |
Q |
| |
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||||||||||||| |||| |
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| T |
16842791 |
cttgttcagcttcttctc |
16842774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 24210454 - 24210191
Alignment:
| Q |
1 |
tgtacgtgtagagatcagaagcataatttgattccttcatcattttcagtacagatctaaacgcgtccatttggctatcttttccataagcatccagcat |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24210454 |
tgtacgtgtagagatcagaagcacaatttgattccttcatcattttcagtacagatctaaacgcgtccatttggctatcttttccgtaagcatccagcat |
24210355 |
T |
|
| Q |
101 |
tgaattgtaggcttcaagggaaactgagaatacatcaaattgcatcttgtgaacagttcttgacatgtcgctgaagtccttccttttcccataagcatct |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| |||| |
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| T |
24210354 |
tgaattgtaggcttcaagggaaactgagaatccatcaaattgcatcttgcgaacagttcttgacatgtttctgaagtccttctttttcccataagaatct |
24210255 |
T |
|
| Q |
201 |
ataatagtattgtaggtaatgacatcaaccaagccttgtttcttaggcataaaatacaacctcc |
264 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24210254 |
ataatagtattgtaggtgatgacatcaaccaagccttgtttcttagccataaaatacaacctcc |
24210191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 262 - 418
Target Start/End: Complemental strand, 24209839 - 24209686
Alignment:
| Q |
262 |
tccgcacaacaatgctatatgcaatcacatccaacgaatttggtgaagaagacatcttcaactttagatgtaacatctcattgcgtctacagaagcgtcc |
361 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| ||| ||||| ||| |
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| T |
24209839 |
tccgcacaacaatgctatatgcaatcatatccaacgaatttggtgaagaagacttcttcaactttagatacaacatctc--tgcatct-ttgaagcatcc |
24209743 |
T |
|
| Q |
362 |
cataacactataaatatcgatccttgtacaaacaatgtgcttgttcagcttcatctc |
418 |
Q |
| |
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||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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|
| T |
24209742 |
catgacactataaatatcgatcattgtacaaacaatgtgcttgttcagcttcttctc |
24209686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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