View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15636_high_4 (Length: 376)
Name: NF15636_high_4
Description: NF15636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15636_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 25 - 347
Target Start/End: Complemental strand, 52512163 - 52511842
Alignment:
| Q |
25 |
tttcatttaggtgatatgtgtggtggtacaggaaaatggaaagctcttaacaggaagcgagcacaagatgtttatgaatttactgaatgtcctaattgtt |
124 |
Q |
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| T |
52512163 |
tttcatttaggtgatatgtgtggtggtacaggaaaatggaaagctcttaacaggaagcgagcacaagatgtttatgaatttactgaatgtcctaattgtt |
52512064 |
T |
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| Q |
125 |
atggtatcattcattcttctactttgctcatttcnnnnnnnncttagtaaacgactaaattgacagattttccgtaggtcgaggaaagcttgtctgccct |
224 |
Q |
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| T |
52512063 |
atggtatcattcattcttctaatttgctcatttcttttttt-cttagtaaacgactaaattgactgattttccgtaggtcgaggaaagcttgtctgccct |
52511965 |
T |
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| Q |
225 |
gtttgtttaggaactggtgtgccaaacaataaaggtcttctcaggaggcctgacgcaaagaaactgcttgataagatgtataatggacgcctacttccaa |
324 |
Q |
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| T |
52511964 |
gtttgtttaggaactggtgtgccaaacaataaaggtcttctcaggaggcctgacgcaaagaaactgcttgataagatgtataatggacgcctacttccca |
52511865 |
T |
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| Q |
325 |
attcttagaaggcatgtatacta |
347 |
Q |
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| T |
52511864 |
attcttagaaggtatgtatacta |
52511842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Complemental strand, 52512196 - 52512166
Alignment:
| Q |
2 |
ttcttccttattataatactacttttcattt |
32 |
Q |
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| T |
52512196 |
ttcttccttattataatactacttttcattt |
52512166 |
T |
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