View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15636_high_6 (Length: 339)
Name: NF15636_high_6
Description: NF15636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15636_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 33169616 - 33169297
Alignment:
| Q |
1 |
agagcttcaaaataaatccatttttt-cttctaataaaagatgtttatagttttccgttaacaataagagtaataacacaacgagatatatgaaaataag |
99 |
Q |
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||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33169616 |
agagcttgaaaatgaatccatttttttcttctaataaaagatgtttatagttttccgttaacaataagagtaataacacaacgagatatatgaaaataag |
33169517 |
T |
|
| Q |
100 |
cggtgagactagttgataacatggctacccctgttaaaatatgagtggcctcatttatttgtcttcttttaaatcaaccttaaagtttgtaaactgagcg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33169516 |
cggtgagactagttgataacatggctacccctgttaaaatatgagtggcctcatttgtttgtcttcttttaaatcaaccttaaagtttgtaaactgagcg |
33169417 |
T |
|
| Q |
200 |
gcaaagaacttcctacaaattgtgataacataaccaagttctataacatcaatctgattcagt-aaggcatttgttggggttttgcaatcaagcacgaaa |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
33169416 |
gcaaagaacttcctacaaattgtgataacataaccaagttctataacatcaatctgattcagtgaaggcatttgttggggttttgcaatcaagcatgaaa |
33169317 |
T |
|
| Q |
299 |
tcaatattatcaaattgcat |
318 |
Q |
| |
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|||| ||||||||||||||| |
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| T |
33169316 |
tcaacattatcaaattgcat |
33169297 |
T |
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