View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15636_high_7 (Length: 338)
Name: NF15636_high_7
Description: NF15636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15636_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 4986089 - 4985817
Alignment:
| Q |
1 |
tcatgcaaaaatatggtaagacacactaaccttaaaaatgagactgttannnnnnnaaaccttttttatgacataacagttgccataatctcaaggaatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4986089 |
tcatgcaaaaatatggtaagacacactaaccttaaaaatgagactgttatttttttaaaccttttttatgacataacagttgccataatctcaaggaatc |
4985990 |
T |
|
| Q |
101 |
tcacctacaaagttcattgtcaacagttaggtttgaaatttgattgagactttggagctcaaaattttcaactgtcggcaagtaatgtcctatatttaca |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||| |
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| T |
4985989 |
tcaccgacaaagttcattgtcaacagttaggtttgaaatttgattgagactttggagctcaaaattttctactttcggcaagtagtgtcctatatttaca |
4985890 |
T |
|
| Q |
201 |
ttaaaattacaagagtttgtgccgcaatttaaacaaattttgatacataatcaagaataaaatatcttctcag |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
4985889 |
ttaaaattacaagagtttgtgccgcaatttaaacaaattttgatatacaatcaagaataaaatatcttctcag |
4985817 |
T |
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