View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15637_high_14 (Length: 358)
Name: NF15637_high_14
Description: NF15637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15637_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 52 - 340
Target Start/End: Complemental strand, 30720031 - 30719743
Alignment:
| Q |
52 |
tttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaattcataagttgagtactgggaagttggtctctttatcggaacaagaacttg |
151 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30720031 |
tttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaatccataagttgagtactgggaagttggtctctttatcggaacaagaacttg |
30719932 |
T |
|
| Q |
152 |
ttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatggtgctttcaaattcatcattcaaaatcgtagactcaacactgaagc |
251 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
30719931 |
ttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatggactcaacactgaagc |
30719832 |
T |
|
| Q |
252 |
tcaatatccttatcaaggtgttgatggaacttgcagtgcaaataaagcatccatccatgcagttaccattaccgggtatgatgatgtcc |
340 |
Q |
| |
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|||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
30719831 |
tcaatacccctatcaaggtgttgacggaacttgcagtgcaaacaaagcatccatccatgcagttactattaccgggtatgaagatgtcc |
30719743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 52 - 340
Target Start/End: Original strand, 30881328 - 30881616
Alignment:
| Q |
52 |
tttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaattcataagttgagtactgggaagttggtctctttatcggaacaagaacttg |
151 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30881328 |
tttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaatccataagttgagtactgggaagttggtctctttatcggaacaagaacttg |
30881427 |
T |
|
| Q |
152 |
ttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatggtgctttcaaattcatcattcaaaatcgtagactcaacactgaagc |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
30881428 |
ttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatggactcaacactgaagc |
30881527 |
T |
|
| Q |
252 |
tcaatatccttatcaaggtgttgatggaacttgcagtgcaaataaagcatccatccatgcagttaccattaccgggtatgatgatgtcc |
340 |
Q |
| |
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|||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
30881528 |
tcaatacccctatcaaggtgttgacggaacttgcagtgcaaacaaagcatccatccatgcagttactattaccgggtatgaagatgtcc |
30881616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 52 - 294
Target Start/End: Original strand, 30892411 - 30892653
Alignment:
| Q |
52 |
tttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaattcataagttgagtactgggaagttggtctctttatcggaacaagaacttg |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30892411 |
tttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaatccataagttgagtactgggaagttggtctctttatcggaacaagaacttg |
30892510 |
T |
|
| Q |
152 |
ttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatggtgctttcaaattcatcattcaaaatcgtagactcaacactgaagc |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| |||||||||| |
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|
| T |
30892511 |
ttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatggactccacactgaagc |
30892610 |
T |
|
| Q |
252 |
tcaatatccttatcaaggtgttgatggaacttgcagtgcaaat |
294 |
Q |
| |
|
|||||| || |||||||||||||| |||||||||||||||||| |
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|
| T |
30892611 |
tcaatacccctatcaaggtgttgacggaacttgcagtgcaaat |
30892653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 55 - 340
Target Start/End: Complemental strand, 44731464 - 44731179
Alignment:
| Q |
55 |
gtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaattcataagttgagtactgggaagttggtctctttatcggaacaagaacttgttg |
154 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44731464 |
gtaggatgttgttgggcattttcagctgttgcagcaaccgaaggaattactaagttgagtactggaaagttggtctctttatcggaacaagaacttgttg |
44731365 |
T |
|
| Q |
155 |
attgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatggtgctttcaaattcatcattcaaaatcgtagactcaacactgaagctca |
254 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||| | |||||||| |
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| T |
44731364 |
attgtgacacaaaaggtgtggaccaaggttgtgagggtggtcttatggacgatgctttcaaattcatcattcaaaatcacggacttagtactgaagccgc |
44731265 |
T |
|
| Q |
255 |
atatccttatcaaggtgttgatggaacttgcagtgcaaataaagcatccatccatgcagttaccattaccgggtatgatgatgtcc |
340 |
Q |
| |
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||| ||||||||||||||||| ||||| |||| |||||| ||||| ||||| ||||||| |||||||||||||||||| ||||||| |
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| T |
44731264 |
atacccttatcaaggtgttgacggaacatgcaatgcaaacaaagcgtccattcatgcagctaccattaccgggtatgaagatgtcc |
44731179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 52 - 340
Target Start/End: Complemental strand, 16867854 - 16867566
Alignment:
| Q |
52 |
tttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaattcataagttgagtactgggaagttggtctctttatcggaacaagaacttg |
151 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||| | |
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|
| T |
16867854 |
tttgtaggatgttgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttgagtactggaaagttgatctctttatcagaacaagaactcg |
16867755 |
T |
|
| Q |
152 |
ttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatggtgctttcaaattcatcattcaaaatcgtagactcaacactgaagc |
251 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| | |||| || || ||||| |
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|
| T |
16867754 |
ttgactgtgacacgaaaggtgtggaccaaggttgtgagggtggtcttatggacgatgctttcaaattcatcattcaaaatcatggactaaataccgaagc |
16867655 |
T |
|
| Q |
252 |
tcaatatccttatcaaggtgttgatggaacttgcagtgcaaataaagcatccatccatgcagttaccattaccgggtatgatgatgtcc |
340 |
Q |
| |
|
| || ||||||||||||||||| || || |||| ||||| |||| ||||||| |||||||||||||||| |||||||| ||||||| |
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|
| T |
16867654 |
caactacccttatcaaggtgttgacgggacatgcaacgcaaacaaaggatccatcaatgcagttaccattactgggtatgaagatgtcc |
16867566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 52 - 338
Target Start/End: Original strand, 8898943 - 8899229
Alignment:
| Q |
52 |
tttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaattcataagttgagtactgggaagttggtctctttatcggaacaagaacttg |
151 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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|
| T |
8898943 |
tttgtaggatgttgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttgagtactggaaagttggtctctttatcagaacaagaacttg |
8899042 |
T |
|
| Q |
152 |
ttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatggtgctttcaaattcatcattcaaaatcgtagactcaacactgaagc |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
8899043 |
ttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatggactcaacactgaagc |
8899142 |
T |
|
| Q |
252 |
tcaatatccttatcaaggtgttgatggaacttgcagtgcaaataaagcatccatccatgcagttaccattaccgggtatgatgatgt |
338 |
Q |
| |
|
|||||| || ||||| |||||||||||||| || | |||||||||||||||||| || ||| ||| |||||||||||||| ||||| |
|
|
| T |
8899143 |
tcaatacccctatcagggtgttgatggaacatgtaatgcaaataaagcatccattcaagcaactactattaccgggtatgaagatgt |
8899229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 52 - 286
Target Start/End: Original strand, 31727101 - 31727335
Alignment:
| Q |
52 |
tttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaattcataagttgagtactgggaagttggtctctttatcggaacaagaacttg |
151 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||| || || || |||||||||||||| ||||||||||||| |
|
|
| T |
31727101 |
tttgtaggatgttgttgggcgttttctgcggttgcatcaaccgaaggaattcataagttgaccacaggaaatttggtctctttatcagaacaagaacttg |
31727200 |
T |
|
| Q |
152 |
ttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatggtgctttcaaattcatcattcaaaatcgtagactcaacactgaagc |
251 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| | |||| | ||||||||| |
|
|
| T |
31727201 |
ttgattgtgacacaaatggtgaagaccaaggttgtgagggtggtcttatggatgatgcttttgaattcatcatccaaaataatggacttagcactgaagc |
31727300 |
T |
|
| Q |
252 |
tcaatatccttatcaaggtgttgatggaacttgca |
286 |
Q |
| |
|
| |||| ||||||||||||||||||||||| |||| |
|
|
| T |
31727301 |
tgaatacccttatcaaggtgttgatggaacatgca |
31727335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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