View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15637_high_19 (Length: 343)
Name: NF15637_high_19
Description: NF15637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15637_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 7502743 - 7502429
Alignment:
| Q |
1 |
gtttggtggaacattaacgactgtaaatttccaacaaaccccgagtatgttaaaaccattgctaacaacattcgcttagctctgtcgaaagcaaaccttc |
100 |
Q |
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| T |
7502743 |
gtttggtggaacattaacgactgtaaatttccaacaaaccccgagtatgttaaaaccattgctaacaacattcgcttagctctgtcgaaagcaaaccttc |
7502644 |
T |
|
| Q |
101 |
ttggagaactttccatttcagcttacggagacaccaatcacatcgccagtgaaattctaaacgcgctttcctccacaggcatctccgtccatcacgtcac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7502643 |
ttggagaactttccatttcagcttacggagacaccaatctcatcgccagtgaaattctaaacgcgctttcctccacaggcatctccgtccatcacgtcac |
7502544 |
T |
|
| Q |
201 |
tagcgtctctgatagttactttgatgaatgttacaaaaagattattactgatatgtcactgtgggctctagataaccctaatgctaatgttttgttgata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7502543 |
tagcgtctctgatagttactttgatgaatgttacaaaaagattattactgatatgtcactgtgggctctaggtaaccctaatgctaatgttttgttgata |
7502444 |
T |
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| Q |
301 |
tttgctaatggaggt |
315 |
Q |
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||||||||||||||| |
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| T |
7502443 |
tttgctaatggaggt |
7502429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 7499409 - 7499231
Alignment:
| Q |
1 |
gtttggtggaacattaacgactgtaaatttccaacaaaccccgagtatgttaaaaccattgctaacaacattcgcttagctctgtcgaaagcaaaccttc |
100 |
Q |
| |
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||||||||||||||| | ||||||||| |||||||||||| |||| |||| | |||| |||||||||||| ||||| |||| |||||| || |||| |
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| T |
7499409 |
gtttggtggaacattgatgactgtaaagttccaacaaacctcgagagcgttaccaacatttctaacaacattcccttagtcctgttgaaagccaaacttc |
7499310 |
T |
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| Q |
101 |
ttggagaactttccatttcagcttacggagacaccaatcacatcgccagtgaaattctaaacgcgctttcctccacagg |
179 |
Q |
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||| ||| |||||||| | ||||| ||||||||||||| |||| |||||||||||||||||| ||||||||||||| |
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| T |
7499309 |
atggcgaaatttccattacggcttatggagacaccaatctcatctccagtgaaattctaaacggtatttcctccacagg |
7499231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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