View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15637_high_28 (Length: 320)

Name: NF15637_high_28
Description: NF15637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15637_high_28
NF15637_high_28
[»] chr8 (2 HSPs)
chr8 (36-317)||(14995189-14995470)
chr8 (6-42)||(22732207-22732243)
[»] chr4 (15 HSPs)
chr4 (36-317)||(41860582-41860863)
chr4 (36-317)||(52681467-52681748)
chr4 (169-316)||(30576541-30576688)
chr4 (39-193)||(15056967-15057124)
chr4 (200-296)||(14991327-14991423)
chr4 (172-218)||(47964110-47964156)
chr4 (6-42)||(41861939-41861975)
chr4 (6-42)||(41862030-41862066)
chr4 (6-42)||(41862121-41862157)
chr4 (6-42)||(41862212-41862248)
chr4 (6-42)||(41862403-41862439)
chr4 (6-42)||(41946638-41946674)
chr4 (6-42)||(41946729-41946765)
chr4 (6-42)||(52680359-52680395)
chr4 (6-42)||(53285696-53285732)
[»] chr7 (11 HSPs)
chr7 (36-317)||(22005714-22005995)
chr7 (36-317)||(7892490-7892771)
chr7 (35-317)||(3598959-3599241)
chr7 (174-293)||(13604144-13604262)
chr7 (6-42)||(3600149-3600185)
chr7 (6-42)||(5090967-5091003)
chr7 (6-42)||(7891382-7891418)
chr7 (6-42)||(13927440-13927476)
chr7 (6-42)||(22004323-22004359)
chr7 (6-42)||(22004514-22004550)
chr7 (6-42)||(22004605-22004641)
[»] chr5 (7 HSPs)
chr5 (36-317)||(32674006-32674287)
chr5 (36-232)||(22636691-22636891)
chr5 (174-267)||(21122329-21122422)
chr5 (6-42)||(20844506-20844542)
chr5 (6-42)||(23179540-23179576)
chr5 (6-42)||(23179631-23179667)
chr5 (6-42)||(32672891-32672927)
[»] chr3 (15 HSPs)
chr3 (36-317)||(26950254-26950535)
chr3 (36-317)||(36092512-36092793)
chr3 (36-317)||(18200483-18200764)
chr3 (174-260)||(12807577-12807663)
chr3 (180-267)||(14458470-14458557)
chr3 (6-42)||(854976-855012)
chr3 (6-42)||(6953291-6953327)
chr3 (6-42)||(6953430-6953466)
chr3 (6-42)||(6953812-6953848)
chr3 (6-42)||(18199352-18199388)
chr3 (6-42)||(36093873-36093909)
chr3 (6-42)||(36093964-36094000)
chr3 (6-42)||(36947725-36947761)
chr3 (6-42)||(36947864-36947900)
chr3 (6-42)||(36948003-36948039)
[»] chr2 (9 HSPs)
chr2 (36-317)||(13906996-13907277)
chr2 (36-317)||(26454641-26454922)
chr2 (36-317)||(40604478-40604759)
chr2 (6-42)||(32287325-32287361)
chr2 (6-42)||(13899908-13899944)
chr2 (6-42)||(13905806-13905842)
chr2 (6-42)||(26453534-26453570)
chr2 (6-42)||(35433139-35433175)
chr2 (6-42)||(40603369-40603405)
[»] chr6 (1 HSPs)
chr6 (36-317)||(3590335-3590616)
[»] chr1 (8 HSPs)
chr1 (36-317)||(35595659-35595940)
chr1 (36-317)||(2045958-2046239)
chr1 (234-301)||(52589715-52589782)
chr1 (6-42)||(2051974-2052010)
chr1 (6-42)||(39514207-39514243)
chr1 (6-42)||(45507254-45507290)
chr1 (6-42)||(45507403-45507439)
chr1 (6-42)||(49791612-49791648)
[»] scaffold0121 (3 HSPs)
scaffold0121 (6-42)||(41422-41458)
scaffold0121 (6-42)||(41240-41276)
scaffold0121 (6-42)||(41331-41367)
[»] scaffold0160 (1 HSPs)
scaffold0160 (6-42)||(36132-36168)


Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 14995470 - 14995189
Alignment:
Q  36 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 135  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14995470 tcctcctcttttttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 14995371  T
Q  136 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14995370 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 14995271  T
Q  236 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 317  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14995270 ttgtttagtttgatttttggttatttgtaatccgatgactgtttgaattgcattgctatctaatttattatcatctcttttt 14995189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 22732243 - 22732207
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  22732243 caaaccctaaccatgatttcctaatttcactcctcct 22732207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 41860863 - 41860582
Alignment:
Q  36 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 135  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860863 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 41860764  T
Q  136 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860763 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 41860664  T
Q  236 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860663 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 41860582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 36 - 317
Target Start/End: Original strand, 52681467 - 52681748
Alignment:
Q  36 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 135  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  52681467 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaacagctttttaggcttcttac 52681566  T
Q  136 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 235  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||    
T  52681567 aaaatcaaagtaattgttatataattggtgtggggtttagtttgttgattttgcaattcaggaattttcaaattcggggttgaaataagagtatgagcat 52681666  T
Q  236 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  52681667 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattggattgctatctaatttattatcatctcttttt 52681748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 169 - 316
Target Start/End: Complemental strand, 30576688 - 30576541
Alignment:
Q  169 ggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaatcc 268  Q
    ||||||||||||| ||||||||||  || ||||| |||| | | |||||||||||||| | |||| |||||||| || ||||||| |||||||||||| |    
T  30576688 ggtttggtttgttcattttgcagtagagaaatttccaaaatggcggttggaataagagcaagagcttttgtttaattggattttttgttatttgtaattc 30576589  T
Q  269 gatgactttttgaattgcattgctatctaatttattatcatctctttt 316  Q
    || || |||||||||| ||||| |||||||||||||| ||||||||||    
T  30576588 gacgagtttttgaatttcattgttatctaatttattaccatctctttt 30576541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 193
Target Start/End: Original strand, 15056967 - 15057124
Alignment:
Q  39 tcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttacaaa 138  Q
    |||||||||| ||||| ||| ||||||||  |||||| ||  | |||||||||| | |||| |||||||| |||||||||||| ||||  |||||  |||    
T  15056967 tcctcttcttcgtgaccaagtttaaccacgtatctttattctctttcaattcctttgttgttcaaaatagattgcaatagcttcttagatttcttttaaa 15057066  T
Q  139 atcaaagtaattgtt----atatgattggtgtggggtttggtttgttgattttgcagtt 193  Q
    ||||| |||||||||    ||||||||| |||  |||||||| ||||||||||| ||||    
T  15057067 atcaacgtaattgttgttcatatgattgttgt-aggtttggtatgttgattttggagtt 15057124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 296
Target Start/End: Original strand, 14991327 - 14991423
Alignment:
Q  200 ttttcaaattcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatct 296  Q
    ||||| |||| ||||||| |||||||||   |  ||||||||| |||||| |||||||||||||| |  |||||  || ||||||||||||||||||    
T  14991327 ttttctaattgggggttgtaataagagtgaaaatatttgtttaatttgatctttggttatttgtattatgatgagattctgaattgcattgctatct 14991423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 47964156 - 47964110
Alignment:
Q  172 ttggtttgttgattttgcagttcaggaattttcaaattcggggttgg 218  Q
    |||||||||||||||| ||||| | ||||||||||||| ||||||||    
T  47964156 ttggtttgttgattttacagtttatgaattttcaaattaggggttgg 47964110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 41861975 - 41861939
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41861975 caaaccctaaccatgatttcctaatttccctcctcct 41861939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 41862066 - 41862030
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41862066 caaaccctaaccatgatttcctaatttccctcctcct 41862030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 41862157 - 41862121
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41862157 caaaccctaaccatgatttcctaatttccctcctcct 41862121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 41862248 - 41862212
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41862248 caaaccctaaccatgatttcctaatttccctcctcct 41862212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 41862439 - 41862403
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41862439 caaaccctaaccatgatttcctaatttccctcctcct 41862403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 41946674 - 41946638
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41946674 caaaccctaaccatgatttcctaatttccctcctcct 41946638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 41946765 - 41946729
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41946765 caaaccctaaccatgatttcctaatttccctcctcct 41946729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 52680359 - 52680395
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  52680359 caaaccctaaccatgatttcctaatttccctcctcct 52680395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 53285696 - 53285732
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  53285696 caaaccctaaccatgatttcctaatttcactcctcct 53285732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 36 - 317
Target Start/End: Original strand, 22005714 - 22005995
Alignment:
Q  36 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 135  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22005714 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 22005813  T
Q  136 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 235  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22005814 aaaatcaaagtaattgttatatgattggtgtggggtttggttttttgattttgcagttcaggaattttcaaattcggggttgaaataagagtaggagcat 22005913  T
Q  236 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22005914 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 22005995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 36 - 317
Target Start/End: Original strand, 7892490 - 7892771
Alignment:
Q  36 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 135  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7892490 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaacagctttttaggcttcttac 7892589  T
Q  136 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  7892590 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttgaaataagagtatgagcat 7892689  T
Q  236 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7892690 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattggattgctatctaatttattatcatctcttttt 7892771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 35 - 317
Target Start/End: Complemental strand, 3599241 - 3598959
Alignment:
Q  35 atcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttctta 134  Q
    ||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3599241 atcctcctcttatctgtgactaaggttaaccacacatctttctttacattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttctta 3599142  T
Q  135 caaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagca 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  3599141 caaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgtagttcaggaattttcaaattcggggttggaataagagtgggagca 3599042  T
Q  235 tttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 317  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3599041 tttgtttagtttgatttttggttatttgtatttcgatgactttttgaattgcattgctatctaatttattatcatctcttttt 3598959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 293
Target Start/End: Complemental strand, 13604262 - 13604144
Alignment:
Q  174 ggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaatccgatga 273  Q
    |||||||||||||| || || | ||||||||||||| ||||||   |||||||||  | |||||||||| ||||||||||||||||| |||||| | |||    
T  13604262 ggtttgttgattttacattt-atgaattttcaaattaggggttaagataagagtaataacatttgtttaatttgatttttggttattcgtaatctggtga 13604164  T
Q  274 ctttttgaattgcattgcta 293  Q
     | ||| ||||| |||||||    
T  13604163 gtgtttaaattgtattgcta 13604144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 3600185 - 3600149
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  3600185 caaaccctaaccatgatttcctaatttccctcctcct 3600149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 5090967 - 5091003
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  5090967 caaaccctaaccatgatttcctaatttcactcctcct 5091003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 7891382 - 7891418
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  7891382 caaaccctaaccatgatttcctaatttccctcctcct 7891418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 13927440 - 13927476
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  13927440 caaaccctaaccatgatttcctaatttccctcctcct 13927476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 22004323 - 22004359
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  22004323 caaaccctaaccatgatttcctaatttccctcctcct 22004359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 22004514 - 22004550
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  22004514 caaaccctaaccatgatttcctaatttccctcctcct 22004550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 22004605 - 22004641
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  22004605 caaaccctaaccatgatttcctaatttccctcctcct 22004641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 36 - 317
Target Start/End: Original strand, 32674006 - 32674287
Alignment:
Q  36 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 135  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32674006 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaataacttgcaatagctttttaggcttcttac 32674105  T
Q  136 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32674106 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcaattcaggaattttcaaattcggggttggaataagagtaggagcat 32674205  T
Q  236 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32674206 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 32674287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 36 - 232
Target Start/End: Complemental strand, 22636891 - 22636691
Alignment:
Q  36 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 135  Q
    ||||||||||||  |||||||||||||||| || |||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  22636891 tcctcctcttctccgtgactaaggttaaccgcatatctttctttccgttcaattcctcttttgttcaaaatagcttgcaatagctttttaggcttcttac 22636792  T
Q  136 aaaatcaaagtaattgtt----atatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtagga 231  Q
    ||||||||||||||||||    |||||||||||||||||||| ||||||||||||||||||| | || |||||||||| | |||||||| ||||||||||    
T  22636791 aaaatcaaagtaattgttgttcatatgattggtgtggggttttgtttgttgattttgcagtttatgagttttcaaattggtggttggaaaaagagtagga 22636692  T
Q  232 g 232  Q
    |    
T  22636691 g 22636691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 267
Target Start/End: Original strand, 21122329 - 21122422
Alignment:
Q  174 ggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaatc 267  Q
    |||||||||||||| | ||  | ||||||| ||||| ||||||   |||||||||  |||||||||||| ||| ||||||||||||| ||||||    
T  21122329 ggtttgttgattttacggtctatgaatttttaaattaggggttaagataagagtaatagcatttgtttaattttatttttggttattcgtaatc 21122422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 20844506 - 20844542
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  20844506 caaaccctaaccatgatttcctaatttccctcctcct 20844542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 23179540 - 23179576
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  23179540 caaaccctaaccatgatttcctaatttccctcctcct 23179576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 23179631 - 23179667
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  23179631 caaaccctaaccatgatttcctaatttccctcctcct 23179667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 32672891 - 32672927
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  32672891 caaaccctaaccatgatttcctaatttccctcctcct 32672927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 36 - 317
Target Start/End: Original strand, 26950254 - 26950535
Alignment:
Q  36 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 135  Q
    |||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950254 tcctcctcttttctgtgactaaggttaaccacacatctttctttgcattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 26950353  T
Q  136 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950354 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 26950453  T
Q  236 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26950454 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgttatctaatttattatcatctcttttt 26950535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 36092793 - 36092512
Alignment:
Q  36 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 135  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36092793 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 36092694  T
Q  136 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36092693 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcatgaattttcaaattcggggttggaataagagtaggagcat 36092594  T
Q  236 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 317  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36092593 ttgtttagtttgatttttggttatttgtaatctgatgactttttgaattgcattgctatctaatttattatcatctcttttt 36092512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 36 - 317
Target Start/End: Original strand, 18200483 - 18200764
Alignment:
Q  36 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 135  Q
    |||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18200483 tcctcctcttttatgtgactaaggttaaccacacatctttctctccattcaattcctctattgtacaaaatagcttgcaatagctttttagacttcttac 18200582  T
Q  136 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  18200583 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaatttggggttggaataagaataggagcat 18200682  T
Q  236 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18200683 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 18200764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 260
Target Start/End: Complemental strand, 12807663 - 12807577
Alignment:
Q  174 ggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcatttgtttagtttgatttttggttatt 260  Q
    |||||||||||||| ||||| | ||||||||||||| ||||||   |||||||||  | |||||||||| |||||||||||||||||    
T  12807663 ggtttgttgattttacagtttatgaattttcaaattaggggttaagataagagtaataacatttgtttaatttgatttttggttatt 12807577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 14458557 - 14458470
Alignment:
Q  180 ttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaatc 267  Q
    |||||||| ||||| | ||||||||||||| || |||   |||||||||  |||||||||||| ||| ||||||||| ||| ||||||    
T  14458557 ttgattttacagtttatgaattttcaaattaggagttaagataagagtaatagcatttgtttaattttatttttggtaattcgtaatc 14458470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 854976 - 855012
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  854976 caaaccctaaccatgatttcctaatttccctcctcct 855012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 6953327 - 6953291
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  6953327 caaaccctaaccatgatttcctaatttccctcctcct 6953291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 6953466 - 6953430
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  6953466 caaaccctaaccatgatttcctaatttccctcctcct 6953430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 6953848 - 6953812
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  6953848 caaaccctaaccatgatttcctaatttccctcctcct 6953812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 18199352 - 18199388
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  18199352 caaaccctaaccatgatttcctaatttccctcctcct 18199388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 36093909 - 36093873
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36093909 caaaccctaaccatgatttcctaatttccctcctcct 36093873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 36094000 - 36093964
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36094000 caaaccctaaccatgatttcctaatttccctcctcct 36093964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 36947761 - 36947725
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36947761 caaaccctaaccatgatttcctaatttccctcctcct 36947725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 36947900 - 36947864
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36947900 caaaccctaaccatgatttcctaatttccctcctcct 36947864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 36948039 - 36948003
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36948039 caaaccctaaccatgatttcctaatttccctcctcct 36948003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 36 - 317
Target Start/End: Original strand, 13906996 - 13907277
Alignment:
Q  36 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 135  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13906996 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 13907095  T
Q  136 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 235  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13907096 aaaatcaaagtaattgttatatgattggtgtggggtttggttttttgattttgcagttcaggaattttcaaattcggggttgaaataagagtaggagcat 13907195  T
Q  236 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13907196 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 13907277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 36 - 317
Target Start/End: Original strand, 26454641 - 26454922
Alignment:
Q  36 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 135  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26454641 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaacagctttttaggcttcttac 26454740  T
Q  136 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  26454741 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttgaaataagagtatgagcat 26454840  T
Q  236 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26454841 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 26454922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 36 - 317
Target Start/End: Original strand, 40604478 - 40604759
Alignment:
Q  36 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 135  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  40604478 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaacaactttttaggcttcttac 40604577  T
Q  136 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||    
T  40604578 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcagaaattttcaaattcggggttgaaataagagtatgagcat 40604677  T
Q  236 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40604678 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattggattgctatctaatttattatcatctcttttt 40604759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 32287325 - 32287361
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    |||||||||||||||||||||||||||| ||||||||    
T  32287325 caaaccctaaccatgatttcctaatttccatcctcct 32287361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 13899908 - 13899944
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  13899908 caaaccctaaccatgatttcctaatttccctcctcct 13899944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 13905806 - 13905842
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  13905806 caaaccctaaccatgatttcctaatttccctcctcct 13905842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 26453534 - 26453570
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  26453534 caaaccctaaccatgatttcctaatttccctcctcct 26453570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 35433175 - 35433139
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  35433175 caaaccctaaccatgatttcctaatttccctcctcct 35433139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 40603369 - 40603405
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  40603369 caaaccctaaccatgatttcctaatttccctcctcct 40603405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 36 - 317
Target Start/End: Original strand, 3590335 - 3590616
Alignment:
Q  36 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 135  Q
    |||||||||| | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3590335 tcctcctcttttatgtgactaaggttaaccacacatctttctctctattcaattcctctattgtacaaaatagcttgcaatagctttttagacttcttac 3590434  T
Q  136 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3590435 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcagcaattttcaaattcggggttggaataagagtaggagcat 3590534  T
Q  236 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3590535 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 3590616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 35595940 - 35595659
Alignment:
Q  36 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 135  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35595940 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 35595841  T
Q  136 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 235  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35595840 aaaatcaaaataattgttatatgattggtgtgggatttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtgggagcat 35595741  T
Q  236 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 317  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  35595740 ttgtttagtttgatttttggttatttgtaatccgttgactttttgaattgcattgctatctaatttattatcatctcctttt 35595659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 2046239 - 2045958
Alignment:
Q  36 tcctcctcttctttgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaatagctttttaggcttcttac 135  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2046239 tcctcctcttttctgtgactaaggttaaccacacatctttctttccattcaattcctctattgtacaaaatagcttgcaacagctttttaggcttcttac 2046140  T
Q  136 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgcagttcaggaattttcaaattcggggttggaataagagtaggagcat 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  2046139 aaaatcaaagtaattgttatatgattggtgtggggtttggtttgtttattttgcagttcaggaattttcaaattcggggttgaaataagagtatgagcat 2046040  T
Q  236 ttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctcttttt 317  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2046039 ttatttagtttgatttttggttatttgtaatccgatgactttttgaattggattgctatctaatttattatcatctcttttt 2045958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 52589715 - 52589782
Alignment:
Q  234 atttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaattt 301  Q
    ||||||||  |||||||||| ||||||||||||   | || |||||||||||||||||||||||||||    
T  52589715 atttgtttgatttgattttttgttatttgtaatgtaacgagtttttgaattgcattgctatctaattt 52589782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 2052010 - 2051974
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  2052010 caaaccctaaccatgatttcctaatttccctcctcct 2051974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 39514243 - 39514207
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  39514243 caaaccctaaccatgatttcctaatttccctcctcct 39514207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 45507290 - 45507254
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  45507290 caaaccctaaccatgatttcctaatttccctcctcct 45507254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 45507439 - 45507403
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  45507439 caaaccctaaccatgatttcctaatttccctcctcct 45507403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 49791648 - 49791612
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  49791648 caaaccctaaccatgatttcctaatttccctcctcct 49791612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 41422 - 41458
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    |||||||||||||||||||||||||||| ||||||||    
T  41422 caaaccctaaccatgatttcctaatttccatcctcct 41458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 41240 - 41276
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41240 caaaccctaaccatgatttcctaatttccctcctcct 41276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 41331 - 41367
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  41331 caaaccctaaccatgatttcctaatttccctcctcct 41367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 36132 - 36168
Alignment:
Q  6 caaaccctaaccatgatttcctaatttctatcctcct 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36132 caaaccctaaccatgatttcctaatttccctcctcct 36168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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