View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15637_high_3 (Length: 572)
Name: NF15637_high_3
Description: NF15637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15637_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 64 - 566
Target Start/End: Complemental strand, 6017414 - 6016911
Alignment:
| Q |
64 |
tttttaaagatgtgatactcatacaatagagcagtatactgagaaaattgtctcaacaacattcatcaaagcattgtccgggtaagtgacaatgactttg |
163 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
6017414 |
tttttaaagatgtgatactcatacaatagagcagtacactgaaaaaattgtctcaacaacattcatcaaagcattgtccttgtaagtgacaatgactatg |
6017315 |
T |
|
| Q |
164 |
agaaaaatatttgaagatcaagtagtctactaaatgatcattgtattcttcatcgaagccttttaatcaattgaaagatcaagtagtctactaaataatc |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
6017314 |
agaaaaatatttgaagatcaagtagtctactaaatgatcattgtattcttcatcgaagcctttttatcaattgaaagatcaagtagtctactaaatgatc |
6017215 |
T |
|
| Q |
264 |
attacaaagtttgagtttacaagaaagcgatgctatattttttacgacctccacttttaaatataggatagttttaagtccttacacccctcaactaact |
363 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6017214 |
attacaaagtttgaatttacaagaaagcgatgctattttttttacgacctccacttttaaatataggatagttttaagtccttatacccctcaactaact |
6017115 |
T |
|
| Q |
364 |
cttcctcgcaagaaaataaacgatttcttcaactccagctcctcttccaaaccactcgaaatcaccatatttttcattgaaacct-ttttatcaactaaa |
462 |
Q |
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|||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6017114 |
cttcctcgcaggaaaataaaccacttcttcaactccagctcctcttccaaaccactcgaaatcaccatatttttcattgaaaccttttttatcaactaaa |
6017015 |
T |
|
| Q |
463 |
agattaaataatatactagagccatccttacgaagtttgagtttgaggttatcataaaacgatgtaatttttgtactaccagtaagatagttttaagccc |
562 |
Q |
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| T |
6017014 |
agattaaataatatactagagccatccttacgaagtttgagtttgaggttatcataaaacgatgtaatttttgtactaccagtaagatagttttaagccc |
6016915 |
T |
|
| Q |
563 |
tccc |
566 |
Q |
| |
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|||| |
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| T |
6016914 |
tccc |
6016911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 12840064 - 12839993
Alignment:
| Q |
72 |
gatgtgatactcatacaatagagcagtatact--gagaaaattgtctcaacaacattcatcaaagcattgtc |
141 |
Q |
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||||||| ||||| |||| |||||||||| || | ||||||||| |||||||||||||||||||||||||| |
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| T |
12840064 |
gatgtgaaactcacacaacagagcagtatccttcgggaaaattgtatcaacaacattcatcaaagcattgtc |
12839993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 480
Target Start/End: Complemental strand, 6170420 - 6170352
Alignment:
| Q |
412 |
aaaccactcgaaatcaccatatttttcattgaaacctttttatcaactaaaagattaaataatatacta |
480 |
Q |
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| T |
6170420 |
aaaccactcgaaatcaccacattattaactgaaacatttttatcaatttaaagattaaatgatctacta |
6170352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 16041737 - 16041784
Alignment:
| Q |
116 |
tcaacaacattcatcaaagcattgtccgggtaagtgacaatgactttg |
163 |
Q |
| |
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||||||||||||||||||||||||||| | | | |||||||||||||| |
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| T |
16041737 |
tcaacaacattcatcaaagcattgtcccgatcaatgacaatgactttg |
16041784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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